Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_C16
(912 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 32 0.46
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 31 0.80
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 31 1.4
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 30 2.4
At1g61080.1 68414.m06877 proline-rich family protein 29 3.2
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 29 5.7
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 29 5.7
At4g33660.1 68417.m04781 expressed protein 29 5.7
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 5.7
At5g21280.1 68418.m02555 hydroxyproline-rich glycoprotein family... 28 7.5
At1g73080.1 68414.m08450 leucine-rich repeat transmembrane prote... 28 7.5
At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA... 28 9.9
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 28 9.9
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 28 9.9
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin... 28 9.9
At4g28630.1 68417.m04093 ABC transporter family protein identica... 28 9.9
At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family... 28 9.9
At3g50130.1 68416.m05480 expressed protein ; expression supporte... 28 9.9
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 32.3 bits (70), Expect = 0.46
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP + + PPPPP
Sbjct: 34 PPPPPSHQPYSYPPPPPPP 52
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 31.5 bits (68), Expect = 0.80
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP + + PPPPP
Sbjct: 399 PPPPPPPPPYVYPSPPPPP 417
Score = 29.5 bits (63), Expect = 3.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPP 907
PPPPP + + PPPP
Sbjct: 414 PPPPPSPPPYVYPPPPPP 431
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP F PPPPP
Sbjct: 49 PPPPPPLYFSYFSLPPPPP 67
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP + PPPPP
Sbjct: 50 PPPPPLYFSYFSLPPPPPP 68
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP + PPPPP
Sbjct: 618 PPPPPPPTYYAVQSPPPPP 636
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 460 PPPPPAVMPLKHFAPPPPP 478
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 509 PPPPPPPLPTTIAAPPPPP 527
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 523 PPPPPPPPRAAVAPPPPPP 541
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 853 PPPXPXXXXXXXXGPPXPPP 912
PPP P GPP PPP
Sbjct: 607 PPPPPMAMANGAAGPPPPPP 626
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP + PPPPP
Sbjct: 194 PPPPPYKYGRVYPPPPPPP 212
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 56 PPPPPAMRRRVLPRPPPPP 74
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 29 PPPPPMRRRAPLPPPPPPP 47
>At4g33660.1 68417.m04781 expressed protein
Length = 76
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPP G + PPPPP
Sbjct: 20 PPPPVGVPPQYYPPPPPPP 38
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP + PPPPP
Sbjct: 438 PPPPPPPPPPVYSPPPPPP 456
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP + PPPPP
Sbjct: 440 PPPPPPPPVYSPPPPPPPP 458
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP + PPPPP
Sbjct: 453 PPPPPPPPPPVYSPPPPPP 471
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP + PPPPP
Sbjct: 455 PPPPPPPPVYSPPPPPPPP 473
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 439 PPPPPPPPPVYSPPPPPPP 457
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 454 PPPPPPPPPVYSPPPPPPP 472
>At5g21280.1 68418.m02555 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 302
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 102 PPPPPQPLNLFSPPPPPPP 120
>At1g73080.1 68414.m08450 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor protein kinase
GI:1389566 from [Arabidopsis thaliana]
Length = 1123
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 303 FGHRNCEIVDMLSGSHSSVRTHIPPCLMQSSSLNGVCVSKGLLHTVTAISKTMTK 139
FG NC+ + L S++ +PP L SSL+ + + G L S M K
Sbjct: 261 FGSPNCKNLLTLDLSYNEFEGGVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLK 315
>At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA1)
identical to half-molecule ABC transporter ATM3
GI:9964121 from [Arabidopsis thaliana]; almost identical
to mitochondrial half-ABC transporter STA1 GI:9187883
from [Arabidopsis thaliana]; identical to cDNA
mitochondrial half-ABC transporter (STA1 gene)GI:9187882
Length = 728
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 192 HKHHSVRRIASDKEVYACARRNVIQTTYRRFRNFY 296
H H R A+++EVY ARR I T F + Y
Sbjct: 571 HNIHYGRLSATEEEVYEAARRAAIHETISNFPDKY 605
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 853 PPPXPXXXXXXXXGPPXPPP 912
PPP P GPP PPP
Sbjct: 371 PPPVPAPQMPSSAGPPRPPP 390
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 853 PPPXPXXXXXXXXGPPXPPP 912
PPP P GPP PPP
Sbjct: 371 PPPVPAPQMPSSAGPPRPPP 390
>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 587
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 909 GGGGGXXXXXXXXPGGGGG 853
GGGGG PGGGGG
Sbjct: 313 GGGGGGPGGKKGGPGGGGG 331
>At4g28630.1 68417.m04093 ABC transporter family protein identical
to half-molecule ABC transporter ATM1 GI:9964117 from
[Arabidopsis thaliana]
Length = 678
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 192 HKHHSVRRIASDKEVYACARRNVIQTTYRRFRNFY 296
H H A+++EVY ARR VI T +F + Y
Sbjct: 529 HNIHYGNLSATEEEVYDAARRAVIHDTIMKFPDKY 563
>At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At3g25690,
At5g61090 [Arabidopsis thaliana]
Length = 681
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 325 PPPPPPSPEHKAPAPPPPP 343
>At3g50130.1 68416.m05480 expressed protein ; expression supported
by MPSS
Length = 564
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 854 PPPPPGXXXFXFXXPPPPP 910
PPPPP PPPPP
Sbjct: 11 PPPPPPPSFRSIPRPPPPP 29
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,135,384
Number of Sequences: 28952
Number of extensions: 291393
Number of successful extensions: 2086
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1701
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -