Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_C14
(893 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 266 2e-71
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 97 2e-20
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 1e-09
SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.72
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79) 30 2.9
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4) 29 6.7
SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05) 28 8.9
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 266 bits (652), Expect = 2e-71
Identities = 130/175 (74%), Positives = 144/175 (82%)
Frame = +2
Query: 263 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSP 442
DVQF+++LPPILNALEV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ +D+G P
Sbjct: 85 DVQFDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGP 144
Query: 443 IRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 622
I IPVG ETLGRIINVIGEPIDERGP+ TDK AAIHAEAPEFV+MS +QEIL TGIKVVD
Sbjct: 145 ITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAEAPEFVEMSTEQEILETGIKVVD 204
Query: 623 LLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVXERTREGNDL 787
LLAPYA TVLIMELINNVAKAHGGYSVFAGV + D+
Sbjct: 205 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGYQPTLATDM 259
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 96.7 bits (230), Expect = 2e-20
Identities = 47/79 (59%), Positives = 53/79 (67%)
Frame = +2
Query: 593 ILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVXERTR 772
+L TGIKV+DL+ PYA TVLI ELINN+AK HGG SVFAGV ERTR
Sbjct: 2 VLFTGIKVIDLIEPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGLSVFAGVGERTR 61
Query: 773 EGNDLYHEMIESGVISLKD 829
EGNDL EM+ESG+I D
Sbjct: 62 EGNDLLREMLESGIIKYGD 80
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 60.9 bits (141), Expect = 1e-09
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Frame = +2
Query: 380 IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAE 556
+ + G + L++ G V +G+ + +PVG E LGR+++ +G PID +GP + A + +
Sbjct: 12 VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVK 70
Query: 557 APEFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG 736
AP + + +E ++TGIK VD L P T + ++ I N + + G
Sbjct: 71 APGIIPRTSVKEPMLTGIKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFNDG 130
>SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 31.9 bits (69), Expect = 0.72
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 373 NCVLTQMLGYLKYEAGRSILHLKGI*NRRQVIFEL-HIYHSTDNGNNLTLAFSCRFSS 203
NC+L + GYLK ++ I++ G QV++ L +Y S + GNNL F +S
Sbjct: 48 NCLLWTIYGYLKDDSTIIIVNFVGA--LLQVVYILCFLYFSRERGNNLAFLFYSAIAS 103
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/69 (34%), Positives = 29/69 (42%)
Frame = -3
Query: 564 SGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSM 385
SG+S+ A +L GP SS+ P T P PTG+ M P S P P P M
Sbjct: 671 SGSSS--AQMLPPMPGPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGM 725
Query: 384 AMVRTVFSP 358
SP
Sbjct: 726 GTHPQQVSP 734
>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
Length = 308
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 498 SPITLMMRPRV-SAPTGIRMGEPESSTG 418
S +T +P SAPTGI G+P SSTG
Sbjct: 112 STLTAFGQPSTTSAPTGISFGQPTSSTG 139
>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 363
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +2
Query: 434 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 529
G PI P+G +GR I IG PI GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312
>SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4)
Length = 231
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -2
Query: 622 IDDFYTSYENLLLHRHVDKLWSFSMNSSSLVGGDGTAL-VNRFAD--YIDDASEGFSSH 455
+DD Y Y + L+ +VD L+ V G L V+ + D Y+D +GF SH
Sbjct: 168 VDDLYNGYVDDLIDGYVDDLYVDGYVDDLYVDGYVDDLYVDGYVDDLYVDGYVDGFQSH 226
>SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)
Length = 1119
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 677 HQLRQTTQSFLLWHKERADRRLLYQLRESPAAQTCRQTLEL 555
+ LR + WH+E+ R +++ LRE A C Q +E+
Sbjct: 467 YDLRGMKEEDAQWHREQVSRGVVFNLREELAIY-CHQDVEV 506
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,398,966
Number of Sequences: 59808
Number of extensions: 564844
Number of successful extensions: 1475
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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