Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C14
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.71 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 806 IQSSRGINHFLHEYALXLQQTQSNHH 729
           I S   +  F+ +++L LQQ Q  HH
Sbjct: 82  ILSPTQLQSFMQQHSLYLQQQQQQHH 107


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 732 PWALATLLISSIINTV 685
           PW L TL++ +I+N +
Sbjct: 63  PWILVTLIVLAIVNVM 78


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 320 RSPRLVLEVAQHLGENTVRTIAMDGTE 400
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,429
Number of Sequences: 438
Number of extensions: 5215
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)