Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C13
         (907 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P42766 Cluster: 60S ribosomal protein L35; n=81; Eukary...    67   5e-10
UniRef50_P34662 Cluster: 60S ribosomal protein L35; n=33; Eukary...    55   3e-06
UniRef50_Q4PGL7 Cluster: Putative uncharacterized protein; n=1; ...    44   0.004
UniRef50_Q9U935 Cluster: Ag15 protein; n=7; Alveolata|Rep: Ag15 ...    44   0.007
UniRef50_Q4WT53 Cluster: 60S ribosomal protein L35; n=5; cellula...    43   0.009
UniRef50_Q4UIF8 Cluster: 60S ribosomal protein L35; n=6; Alveola...    38   0.47 
UniRef50_Q5CJ48 Cluster: 60S ribosomal protein L35; n=2; Cryptos...    35   3.3  

>UniRef50_P42766 Cluster: 60S ribosomal protein L35; n=81;
           Eukaryota|Rep: 60S ribosomal protein L35 - Homo sapiens
           (Human)
          Length = 123

 Score = 67.3 bits (157), Expect = 5e-10
 Identities = 37/81 (45%), Positives = 49/81 (60%)
 Frame = +2

Query: 176 LRVAKVXGGVASKLSKLRVVSKAXARVYIVYHQXXXVNLRNHXKNKXYKPLEFKXPRXPV 355
           LRVAKV GG ASKLSK+RVV K+ ARV  V +Q    NLR   K K YKPL+ +  +   
Sbjct: 31  LRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRA 90

Query: 356 LCARLLLNTKQRSXRGKRSER 418
           +  R  LN  + + + K+ +R
Sbjct: 91  M--RRRLNKHEENLKTKKQQR 109


>UniRef50_P34662 Cluster: 60S ribosomal protein L35; n=33;
           Eukaryota|Rep: 60S ribosomal protein L35 -
           Caenorhabditis elegans
          Length = 123

 Score = 54.8 bits (126), Expect = 3e-06
 Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
 Frame = +2

Query: 176 LRVAKVXGGVASKLSKLRVVSKAXARVYIVYHQXXXVNLRNHXKNKXYKPLEFKXPRXPV 355
           LRV+KV GG ASKLSK+RVV K  AR+  V +Q     LR    +  YKP++ +  +   
Sbjct: 31  LRVSKVTGGAASKLSKIRVVRKNIARLLTVINQTQKQELRKFYADHKYKPIDLRLKKTRA 90

Query: 356 LCARLLLN-TKQRSXRGKRSERN 421
           +  RL  +    RS + +   RN
Sbjct: 91  IRRRLTAHELSLRSAKQQAKSRN 113


>UniRef50_Q4PGL7 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 218

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 27/78 (34%), Positives = 41/78 (52%)
 Frame = +2

Query: 176 LRVAKVXGGVASKLSKLRVVSKAXARVYIVYHQXXXVNLRNHXKNKXYKPLEFKXPRXPV 355
           LRV KV GG +SK+ ++  + K  ARV  V +Q    NLR   K K   PL+ +  +   
Sbjct: 104 LRVQKVAGGSSSKILRINSLRKDIARVLTVMNQKQRANLREFYKGKSQIPLDLRAKKTRA 163

Query: 356 LCARLLLNTKQRSXRGKR 409
           +  R  LN ++ + R +R
Sbjct: 164 I--RRKLNQQRFAMRSQR 179


>UniRef50_Q9U935 Cluster: Ag15 protein; n=7; Alveolata|Rep: Ag15
           protein - Plasmodium falciparum
          Length = 124

 Score = 43.6 bits (98), Expect = 0.007
 Identities = 29/85 (34%), Positives = 44/85 (51%)
 Frame = +2

Query: 176 LRVAKVXGGVASKLSKLRVVSKAXARVYIVYHQXXXVNLRNHXKNKXYKPLEFKXPRXPV 355
           LR++K  G  A K SK+  V K  ARV  VY+Q   + LR   KNK +KP   +  +   
Sbjct: 31  LRISKALGNSA-KNSKIHGVRKNVARVLTVYNQKRKMELRQLYKNKKFKPYNLR--KKLT 87

Query: 356 LCARLLLNTKQRSXRGKRSERNLSS 430
              RL L+ KQ++    R ++ + +
Sbjct: 88  KNKRLQLSPKQKAAMTLRQKKKVQN 112


>UniRef50_Q4WT53 Cluster: 60S ribosomal protein L35; n=5; cellular
           organisms|Rep: 60S ribosomal protein L35 - Aspergillus
           fumigatus (Sartorya fumigata)
          Length = 203

 Score = 43.2 bits (97), Expect = 0.009
 Identities = 29/86 (33%), Positives = 39/86 (45%)
 Frame = +2

Query: 176 LRVAKVXGGVASKLSKLRVVSKAXARVYIVYHQXXXVNLRNHXKNKXYKPLEFKXPRXPV 355
           LRV K+  G +SK  ++  V K+ ARV  V +      LR   KNK Y PL+ + PR   
Sbjct: 94  LRVQKIAAGASSKTQRIHDVRKSIARVLTVINANQRAQLRLFYKNKKYTPLDLR-PRLTR 152

Query: 356 LCARLLLNTKQRSXRGKRSERNLSSH 433
              R L  TK  +      +R    H
Sbjct: 153 ALRRRL--TKHEATLKTEKQRKKEIH 176


>UniRef50_Q4UIF8 Cluster: 60S ribosomal protein L35; n=6;
           Alveolata|Rep: 60S ribosomal protein L35 - Theileria
           annulata
          Length = 142

 Score = 37.5 bits (83), Expect = 0.47
 Identities = 27/70 (38%), Positives = 34/70 (48%)
 Frame = +2

Query: 179 RVAKVXGGVASKLSKLRVVSKAXARVYIVYHQXXXVNLRNHXKNKXYKPLEFKXPRXPVL 358
           RV+KV     SKLSK+ +V KA A+V  VY+Q      R   K     PL  + P+    
Sbjct: 51  RVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLR-PKL-TR 108

Query: 359 CARLLLNTKQ 388
             R  L TKQ
Sbjct: 109 AKRKGLTTKQ 118


>UniRef50_Q5CJ48 Cluster: 60S ribosomal protein L35; n=2;
           Cryptosporidium|Rep: 60S ribosomal protein L35 -
           Cryptosporidium hominis
          Length = 126

 Score = 34.7 bits (76), Expect = 3.3
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 176 LRVAKVXGGVASKLSKLRVVSKAXARVYIVYHQXXXVNLRNHXKNKXYKPLEFK 337
           LRV +  G   +KLS++ VV K  AR+  +  Q    +LR       + PL+ +
Sbjct: 34  LRVIQSTGTAPNKLSRINVVRKGIARILTILSQRNIKSLREKHAGSKFMPLDLR 87


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 405,842,176
Number of Sequences: 1657284
Number of extensions: 3921483
Number of successful extensions: 5340
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5340
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82391630811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)