Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C13
         (907 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo...    51   9e-07
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)            51   9e-07
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi...    51   1e-06
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari...    50   2e-06
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari...    50   2e-06

>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
           ribosomal protein L35- cytosolic, Arabidopsis thaliana,
           PIR:T00549
          Length = 123

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
 Frame = +2

Query: 176 LRVAKVXGGVASKLSKLRVVSKAXARVYIVYHQXXXVNLRNHXKNKXYKPLEFKXPRXPV 355
           LRVAKV GG  +KLSK++VV K+ A+V  V  Q     LR   KNK   PL+ +  +   
Sbjct: 31  LRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRA 90

Query: 356 LCARLLLN-TKQRSXRGKRSE 415
           +  RL  +    ++ R K+ E
Sbjct: 91  IRRRLTKHQASLKTEREKKKE 111


>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
          Length = 123

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
 Frame = +2

Query: 176 LRVAKVXGGVASKLSKLRVVSKAXARVYIVYHQXXXVNLRNHXKNKXYKPLEFKXPRXPV 355
           LRVAKV GG  +KLSK++VV K+ A+V  V  Q     LR   KNK   PL+ +  +   
Sbjct: 31  LRVAKVTGGAPNKLSKIKVVRKSIAQVLTVISQKQKSALREAYKNKKLLPLDLRPKKTRA 90

Query: 356 LCARLLLN-TKQRSXRGKRSE 415
           +  RL  +    ++ R K+ E
Sbjct: 91  IRRRLTKHQASLKTEREKKKE 111


>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
           to 60S ribosomal protein L35 GB:AAC27830
          Length = 123

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
 Frame = +2

Query: 176 LRVAKVXGGVASKLSKLRVVSKAXARVYIVYHQXXXVNLRNHXKNKXYKPLEFKXPRXPV 355
           LRVAKV GG  +KLSK++VV K+ A+V  V  Q     LR   KNK   PL+ +  +   
Sbjct: 31  LRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRA 90

Query: 356 LCARLLLN-TKQRSXRGKRSE 415
           +  RL  +    ++ R K+ E
Sbjct: 91  IRRRLTKHQASLKTEREKKKE 111


>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
           ribosomal L35 proteins
          Length = 123

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 31/81 (38%), Positives = 44/81 (54%)
 Frame = +2

Query: 176 LRVAKVXGGVASKLSKLRVVSKAXARVYIVYHQXXXVNLRNHXKNKXYKPLEFKXPRXPV 355
           LRVAKV GG  +KLSK++VV K+ A+V  V  Q     LR   KNK   PL+ +  +   
Sbjct: 31  LRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRA 90

Query: 356 LCARLLLNTKQRSXRGKRSER 418
           +  R  L   Q S + +R ++
Sbjct: 91  I--RRRLTKHQASLKTEREKK 109


>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
           ribosomal L35 proteins
          Length = 123

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 31/81 (38%), Positives = 44/81 (54%)
 Frame = +2

Query: 176 LRVAKVXGGVASKLSKLRVVSKAXARVYIVYHQXXXVNLRNHXKNKXYKPLEFKXPRXPV 355
           LRVAKV GG  +KLSK++VV K+ A+V  V  Q     LR   KNK   PL+ +  +   
Sbjct: 31  LRVAKVTGGAPNKLSKIKVVRKSIAQVLTVSSQKQKSALREAYKNKKLLPLDLRPKKTRA 90

Query: 356 LCARLLLNTKQRSXRGKRSER 418
           +  R  L   Q S + +R ++
Sbjct: 91  I--RRRLTKHQASLKTEREKK 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,999,311
Number of Sequences: 28952
Number of extensions: 92458
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)