Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_C12
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 1.3
02_01_0020 - 127572-127637,127760-127819,127903-128004,128099-12... 30 2.2
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 3.8
01_01_0699 + 5405178-5405356,5405478-5405693,5405808-5405919,540... 29 3.8
08_02_0272 + 15189617-15190276,15190361-15191107 29 5.1
05_03_0469 + 14439472-14440905 29 6.7
11_04_0358 + 16725417-16725422,16725789-16725858,16727825-167286... 28 8.9
06_01_1082 - 8847795-8848033,8848511-8848724 28 8.9
06_01_0246 - 1856617-1856658,1856756-1856797,1856908-1857035,185... 28 8.9
05_03_0618 - 16262826-16263097,16263111-16263183 28 8.9
04_04_1113 - 30986757-30986780,30986781-30987273,30987437-309879... 28 8.9
03_02_0950 + 12661008-12662312,12662403-12662576 28 8.9
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 8.9
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 403 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 507
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>02_01_0020 -
127572-127637,127760-127819,127903-128004,128099-128194,
128649-128756,128849-128899,129018-130118
Length = 527
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +3
Query: 171 DDVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMXLRLPVMD 350
DD+L E+L + + + E +A+ ++ KKG V++E +K L+E T R P+
Sbjct: 310 DDLLIEKL--NSIEKKIEEKLAEL-DHTFGKKGRVLEEEIKDLVEERNSLTEHKRRPMYR 366
Query: 351 KGW 359
KG+
Sbjct: 367 KGF 369
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 471 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 385
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>01_01_0699 +
5405178-5405356,5405478-5405693,5405808-5405919,
5406335-5406397,5406468-5406606,5406822-5406877,
5408088-5408161,5408270-5408417,5408505-5408678,
5408809-5408896,5408996-5409109,5409728-5409825,
5409927-5410017,5410440-5410534,5410672-5410825,
5410864-5410876,5411276-5411384
Length = 640
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Frame = +1
Query: 823 PVIPNFLHGTSSLLSVV--VKGLPI 891
P++ + LHGT SLLS+V KG+P+
Sbjct: 532 PIMTSSLHGTDSLLSIVQMPKGIPV 556
>08_02_0272 + 15189617-15190276,15190361-15191107
Length = 468
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 723 HDVAFVHGGLKVPVVFEGVSGAITVDDTVITRTFRVIELQVLFVLGGHDLEVNSVVF 553
HD++F HG L++P + VDDT + F ++ + L G + EV + VF
Sbjct: 300 HDISFRHGALRIP--------RLAVDDTTEHKLFSLMAFEQLHGAGAN--EVTAYVF 346
>05_03_0469 + 14439472-14440905
Length = 477
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 497 VTPKTKPARKSPGS--LPPCWKTTEFTSRSCPP 589
+T T+ AR PG+ +PP W+ T+RS PP
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPP 219
>11_04_0358 +
16725417-16725422,16725789-16725858,16727825-16728693,
16729109-16729198,16730071-16730356,16730573-16730592
Length = 446
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -1
Query: 648 DDTVITRTFRVIELQVLFVLGGHDLEVNSVVFQHGGKLPGDFLAGFVFG 502
DDT V+ ++ VLGG D+ V F GG + L GF+FG
Sbjct: 155 DDTTTEDDLMVVSAELEKVLGGVDVASARVSFAMGGGVDCP-LQGFLFG 202
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 685 WYLEPSMYESDVMFFVYNREYNSV 756
W + Y DV+ F YN+EY+ V
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDV 82
>06_01_0246 -
1856617-1856658,1856756-1856797,1856908-1857035,
1857311-1857518,1857617-1857797,1858227-1858271,
1858565-1858918,1860282-1860325
Length = 347
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 858 GRCTMQKVGDNRXLLRCAPRLHVFVGGHIFIK-CHNTVVLSVVDEEHD 718
G C K+G+ ++ ++ +VGGH +IK ++T+V S +E+ D
Sbjct: 278 GNCYTCKIGNKS--MKHPSDVNSYVGGHCYIKGIYDTIVSSDSEEDED 323
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 170 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 84
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>04_04_1113 -
30986757-30986780,30986781-30987273,30987437-30987959,
30988361-30988615,30988812-30988926,30989026-30989078,
30989213-30989265,30989419-30989473,30989549-30989599,
30989776-30990024,30990122-30990350,30990994-30991305
Length = 803
Score = 28.3 bits (60), Expect = 8.9
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = -3
Query: 352 LSITGRRSXMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTS 173
L+ G+ + ++ S + F +S+ + F+ +LA ++ MTT I+ C S
Sbjct: 347 LAYLGQGAFLIANQNSSEQIFFSSIPSGVFWPVFLIANLAALIASRTMTTAIFQC-LKQS 405
Query: 172 SVLGASVALEASAHTARTKANKVSLILAQWLSL 74
LG L+ HT+R K+ + + W L
Sbjct: 406 IALGCFPRLKI-IHTSRKFMAKIYIPVVNWFLL 437
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 174 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 275
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 487 IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNT 621
I F D K+K K K +EN+ + F +M+ D QYL +NT
Sbjct: 354 ILFNDMKEKGVKSGK-KCVLSMENHGIGFLLMAYNDVQYLVPNNT 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,151,193
Number of Sequences: 37544
Number of extensions: 509838
Number of successful extensions: 1686
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1686
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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