Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_C12
(906 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05) 29 5.2
SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5) 28 9.0
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_12137| Best HMM Match : rve (HMM E-Value=0.00054) 28 9.0
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32) 28 9.0
SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 28 9.0
SB_55329| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1) 28 9.0
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 31.1 bits (67), Expect = 1.3
Identities = 23/64 (35%), Positives = 31/64 (48%)
Frame = +2
Query: 494 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 673
S++P + R S GSL P +T+ TSRS PR+ S + + ST P TP
Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRS-TPRSRS-----RSRARTPSTPSTPSTPSTP 232
Query: 674 SNTT 685
S T
Sbjct: 233 STIT 236
>SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05)
Length = 435
Score = 29.1 bits (62), Expect = 5.2
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +1
Query: 430 INKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST-EDKQYL 606
+NK +H + D + IA+G + + ++ + PV E Y + T ED
Sbjct: 22 VNKYEHPIKSIEDLADQQGIAYGTAPGQLAEMLKTASLPVYEKLWRYIETHGTLEDNATY 81
Query: 607 KLDNTKGSSDDRIIYGDSTAD 669
+D + D I+ + D
Sbjct: 82 AIDKVRSRDDYAFIWDSAVLD 102
>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +3
Query: 402 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDH 581
DLH + Q +Q G + + + QQ ++ Q+Q QQ+ L + + + L
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQQQLQQQQQQKQQQQLQKKQQKQSSMEEKLSSE 617
Query: 582 VHR 590
+ +
Sbjct: 618 IEK 620
>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
Length = 260
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 331 SXMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMT 206
S +F++ SI + A+L F F H+ AV+YS T
Sbjct: 130 SRFMFIMRLSILSYAAALFHDQGFEFSLGLHILAAVAYSVRT 171
>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 249 YLKEKKGEVIKEAVKRLIENGKRNTMXL 332
+ +E+ GE EA KRLI+ GK+ M L
Sbjct: 676 FREEEDGESFAEAKKRLIKQGKQQIMFL 703
>SB_12137| Best HMM Match : rve (HMM E-Value=0.00054)
Length = 338
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 162 VQVWR*KPAHTRRGRRQTKSVSSWRSGYL*KQVNKQLQ 49
V+V R +P H R + S++ WRS Y + + L+
Sbjct: 163 VEVRRAEPGHHRSQASPSLSIAGWRSAYFVRSTRRSLR 200
>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
Length = 734
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 538 FTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGD 657
FT + E K MS E+KQ K DN KG S+ + GD
Sbjct: 204 FTEMEEKIDEKVKEMSLEEKQPQKKDNQKGKSEKKKGKGD 243
>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 458
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 503 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 604
P TK PP K T + R CPP T T
Sbjct: 136 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 169
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 503 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 604
P TK PP K T + R CPP T T
Sbjct: 150 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 183
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 503 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 604
P TK PP K T + R CPP T T
Sbjct: 164 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTKCT 197
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 503 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 604
P TK PP K T + R CPP T T
Sbjct: 178 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 211
>SB_55329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 28.3 bits (60), Expect = 9.0
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = -3
Query: 229 AVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQWLSLKASQQTTP 50
AV P +TL ++ +A T L SVA E+ A KA + L +AQ S + + +TP
Sbjct: 97 AVPVKPASTLTFAKNAPTPIPL-TSVAPESPHPQASAKATEAKLRVAQLHSKRKATISTP 155
>SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)
Length = 259
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 503 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST 604
P TK PP K T + R CPP T T
Sbjct: 189 PLTKCTNYRKRRCPPLTKCTNYRKRRCPPLTRCT 222
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 439 RDHHALKLIDQQNHNK-IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLD 615
R HH+ + + K + SKD T+ VS + + E ++ M+T +K +K+
Sbjct: 418 RRHHSFGGLPLEYREKRLRESSSKDNTNTSVSLEIKKIREAQKLIDAAMATSEKS-IKVG 476
Query: 616 NTKGSSDDR 642
+KG D +
Sbjct: 477 ESKGLWDSK 485
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,848,063
Number of Sequences: 59808
Number of extensions: 592908
Number of successful extensions: 1868
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1868
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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