Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C11
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    27   4.7  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    27   4.7  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   6.2  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   8.2  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +1

Query: 196 CKYELCTCNNVDWKVHNQN*KHGKMYFESPNEICRSSRSMER 321
           CKYE C      W  H  N      Y E  +   R S+S  R
Sbjct: 312 CKYEFCWVCLGPWTEHGNNWYTCNRYEEKSSTSARDSQSKSR 353


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 257 STARCISNHPMKFVEAQDRWREMDNVSKRWKLIYRAPMDN 376
           S  + +S++P+ F   ++  +   N S RW L+     DN
Sbjct: 78  SMLQLLSDYPLAFNSTENNQKLQTNPSARWSLLDSMDFDN 117


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 538 IPWQLYSIPCCCESIAFKIRNTTLPRWRRL 627
           + W +  +PC CE+I    R+  L   RRL
Sbjct: 598 LEWPVVFLPCLCENIIPHSRSDDLDEERRL 627


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 391  YNLSYIYYWYHWTQWL 438
            YN  Y Y  Y+W  WL
Sbjct: 1211 YNFEYEYITYNWPHWL 1226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,618,947
Number of Sequences: 5004
Number of extensions: 78210
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)