Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C11
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-5|AAB53832.2|  621|Caenorhabditis elegans Hypothetical pr...    33   0.36 
U00048-4|AAM15547.1|  751|Caenorhabditis elegans Hypothetical pr...    33   0.36 
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu...    29   4.4  
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu...    29   4.4  
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.      29   4.4  
AF125963-3|AAD14744.2|  356|Caenorhabditis elegans Serpentine re...    29   5.9  
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    28   7.8  
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    28   7.8  

>U00048-5|AAB53832.2|  621|Caenorhabditis elegans Hypothetical
           protein C05D11.7a protein.
          Length = 621

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 361 SVY*FPSFRNVIHFSPSILSFYKFHWVIRNTSCRAFNFDYVPSSRRYCTYTIHIYKH 191
           SVY   SF +VI F+ S  + Y+FH+   N   + F        R Y + + H + H
Sbjct: 498 SVYDVDSFEHVIDFTKSHEALYEFHYRDENQVMKTFGLFTDSQQRPYSSASQHQHHH 554


>U00048-4|AAM15547.1|  751|Caenorhabditis elegans Hypothetical
           protein C05D11.7b protein.
          Length = 751

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 361 SVY*FPSFRNVIHFSPSILSFYKFHWVIRNTSCRAFNFDYVPSSRRYCTYTIHIYKH 191
           SVY   SF +VI F+ S  + Y+FH+   N   + F        R Y + + H + H
Sbjct: 516 SVYDVDSFEHVIDFTKSHEALYEFHYRDENQVMKTFGLFTDSQQRPYSSASQHQHHH 572


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 603 RITYFESNTFTATWNAIKLPRYTIHSIGSLAITTLSPSSTGLF 475
           +ITY + NTF AT  A+     T +S  +++ T++S    G+F
Sbjct: 853 QITYSQGNTFDATRPALTTATLTCNSGYTISGTSISACMNGVF 895


>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform b protein.
          Length = 1273

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 549 LPRYTIHSIGSLAITTLSPSSTGLFK 472
           +PRYT+HS G+L I  +  S +G ++
Sbjct: 179 MPRYTLHSDGNLIIDPVDRSDSGTYQ 204


>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
           guidance protein 3,isoform a protein.
          Length = 1269

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 549 LPRYTIHSIGSLAITTLSPSSTGLFK 472
           +PRYT+HS G+L I  +  S +G ++
Sbjct: 179 MPRYTLHSDGNLIIDPVDRSDSGTYQ 204


>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
          Length = 1273

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 549 LPRYTIHSIGSLAITTLSPSSTGLFK 472
           +PRYT+HS G+L I  +  S +G ++
Sbjct: 179 MPRYTLHSDGNLIIDPVDRSDSGTYQ 204


>AF125963-3|AAD14744.2|  356|Caenorhabditis elegans Serpentine
           receptor, class h protein10 protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
 Frame = -2

Query: 297 TNFIG*FEIHLAVLLILIMYLPVDVIARTQFIFTN-----IVFSQLLHFIAST*FS 145
           +NF+  FE HL+V++  ++YLP  VI  +   F       I F  +  FIAST +S
Sbjct: 62  SNFL--FEFHLSVVMKPVLYLPYPVIRFSGAFFLTYINGFISFCIMYLFIASTGWS 115


>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
            protein.
          Length = 1908

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 698  KLNPTFVVTWGDGRFSLGE 754
            KLNP  VVT G+  FS+GE
Sbjct: 1228 KLNPEIVVTVGNASFSIGE 1246


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A protein.
          Length = 1951

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 698  KLNPTFVVTWGDGRFSLGE 754
            KLNP  VVT G+  FS+GE
Sbjct: 1234 KLNPEIVVTVGNASFSIGE 1252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,532,017
Number of Sequences: 27780
Number of extensions: 420723
Number of successful extensions: 1054
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)