Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C10
         (914 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   4.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   4.4  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 15/48 (31%), Positives = 15/48 (31%)
 Frame = +1

Query: 691 GXXXGPXXGQRPXPXGXXPGXPPPXXPPPPRXPXPPXXPPPXAPXXPP 834
           G    P  G      G   G PP     PP    PP   P   P  PP
Sbjct: 40  GGAVQPDPGSCDPSVGLRQGIPPHHYGGPPSGGQPPQGMP--YPRFPP 85


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 260 NXGPPXPPPP 289
           N  PP PPPP
Sbjct: 728 NNAPPPPPPP 737


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 730 PXGXXPGXPPPXXPPPPRXPXPPXXPP 810
           P G      PP    PP  P PP  PP
Sbjct: 166 PTGFLCNNYPPLPQVPP-LPLPPIFPP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.156    0.564 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,902
Number of Sequences: 336
Number of extensions: 3072
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25547951
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)