Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C10
         (914 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.24 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.24
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +1

Query: 715 GQRPXPXGXXPGXPPPXXPPPPRXPXPPXXPPPXAPXXPP 834
           G +P P    P  P    PP P    PP  PP   P   P
Sbjct: 22  GPQPSPH-QSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 0.96
 Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
 Frame = +1

Query: 718 QRPXPXGXXPGXPPPXXPPPPR---XPXPPXXPPPXAPXXPP 834
           Q+P      P   P   P  P+    P P   PPP  P   P
Sbjct: 14  QQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +1

Query: 652 GGXXXPPXPXATPGXXXGPXXGQRPXPXGXXPGXPPPXXPP 774
           G     P P  +P     P  G  P P    P   PP  PP
Sbjct: 19  GAPGPQPSPHQSP---QAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +1

Query: 652 GGXXXPPXPXATPGXXXGPXXGQRPXPXGXXPGXPPPXXP 771
           G    P      P     P   Q P P G  PG PP   P
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGP-PGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +3

Query: 735 GXXPRXPPPXXPPPPPXPXPP 797
           G     P P  PPPPP    P
Sbjct: 333 GDSDTPPKPAPPPPPPSSSGP 353



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 674 DXXPPPGPXPXPXXANGP 727
           D  P P P P P  ++GP
Sbjct: 336 DTPPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 270 PPXPXPPPXP 299
           PP P PPP P
Sbjct: 338 PPKPAPPPPP 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 269  PPXPPPPP 292
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 833 GGXXGAXGGGXXGGXGXRGGGGXXG 759
           G   GA GG    G    GGGG  G
Sbjct: 29  GVVTGASGGSIVVGANNGGGGGGLG 53


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 266  GPPXPPPPP 292
            G P PPPPP
Sbjct: 1855 GSPEPPPPP 1863



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 245  RGLKXNXGPPXPPPPP 292
            R +  +  P  PPPPP
Sbjct: 1849 RNIPVSGSPEPPPPPP 1864


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/38 (28%), Positives = 11/38 (28%)
 Frame = +1

Query: 682 ATPGXXXGPXXGQRPXPXGXXPGXPPPXXPPPPRXPXP 795
           ATP             P     G  P   P PP  P P
Sbjct: 438 ATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPGP 475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.156    0.564 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,154
Number of Sequences: 438
Number of extensions: 7978
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)