Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C09
         (936 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)           138   4e-33
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden...   135   3e-32
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)           130   2e-30
At2g44870.1 68415.m05586 expressed protein                             30   1.9  
At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putativ...    29   5.9  

>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
          Length = 84

 Score =  138 bits (335), Expect = 4e-33
 Identities = 59/78 (75%), Positives = 66/78 (84%)
 Frame = +1

Query: 91  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 270
           IDLLHP P  E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C T+LC
Sbjct: 7   IDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLC 66

Query: 271 QPTGGRARLTEGCSFRRK 324
           QPTGG+ARL EGCSFR+K
Sbjct: 67  QPTGGKARLQEGCSFRKK 84


>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
           identical to cDNA ribosomal protein S27 (ARS27A)
           GI:4193381
          Length = 86

 Score =  135 bits (327), Expect = 3e-32
 Identities = 59/78 (75%), Positives = 66/78 (84%)
 Frame = +1

Query: 91  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 270
           IDLL+P    E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC  C TILC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILC 66

Query: 271 QPTGGRARLTEGCSFRRK 324
           QPTGG+A+LTEGCSFRRK
Sbjct: 67  QPTGGKAKLTEGCSFRRK 84


>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
          Length = 84

 Score =  130 bits (313), Expect = 2e-30
 Identities = 55/78 (70%), Positives = 65/78 (83%)
 Frame = +1

Query: 91  IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 270
           IDLL+P    E+RKHKLKRLV  PNS+FMDVKC GC+ ITTVFSH+Q VV+C  C T+LC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLC 66

Query: 271 QPTGGRARLTEGCSFRRK 324
            PTGG+A+LTEGCSFR+K
Sbjct: 67  TPTGGKAKLTEGCSFRKK 84


>At2g44870.1 68415.m05586 expressed protein
          Length = 248

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 163 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTG 282
           N++ +  +CP C +      +  +++ C GC  I+ QP G
Sbjct: 175 NNFVIKGECPACKR--QFIGYKNQIIRCEGCGNIVWQPQG 212


>At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putative
           similar to UV-damaged DNA binding protein (GI:12082087)
           [Oryza sativa] and damage-specific DNA binding protein
           1, Homo sapiens, PIR2:I38908; contains Pfam PF03178 :
           CPSF A subunit region
          Length = 1088

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
 Frame = +1

Query: 61  CIKAVTMPLAIDLLHPSPASERRKHKLKRLVPHPN-----SYFMDVKCPGCYKITTVFSH 225
           C +  T   AI  L   P++E  +    RL+   +     SY +D    GC  ++  F+ 
Sbjct: 719 CHQEQTRTFAISCLRNEPSAEESESHFVRLLDAQSFEFLSSYPLDAFECGCSILSCSFTD 778

Query: 226 AQRVVVCAGCSTIL---CQPTGGR 288
            + V  C G + +L    +PT GR
Sbjct: 779 DKNVYYCVGTAYVLPEENEPTKGR 802


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,148,753
Number of Sequences: 28952
Number of extensions: 215565
Number of successful extensions: 405
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2236853040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)