Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C07
         (888 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1655| Best HMM Match : Wzy_C (HMM E-Value=3.9)                      55   9e-08
SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13)           46   4e-05
SB_58684| Best HMM Match : AMP-binding (HMM E-Value=0.36)              39   0.006
SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)            36   0.033
SB_48304| Best HMM Match : AMP-binding (HMM E-Value=0)                 31   1.6  
SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011)              29   6.6  
SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   6.6  
SB_33495| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_1655| Best HMM Match : Wzy_C (HMM E-Value=3.9)
          Length = 194

 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
 Frame = +1

Query: 334 YKDVEIPNS--TLYDYVWKNLERWPERTMAVCATTGRGYTYEQGFKLSNTFAANLRRKFQ 507
           +KDV +P+   +   YV K++E + E T  V +T+GR YTY +  ++     + L R+  
Sbjct: 8   FKDVVVPSDIHSFPRYVLKHMESYGEETAMVDSTSGRSYTYNKLTEMIKKCGSALIRQ-G 66

Query: 508 VRDGDVVAVMLPNIPDFPLXDHG 576
           ++  D+VAV+LPN+P++P+  +G
Sbjct: 67  LQTKDMVAVLLPNMPEYPIVFYG 89



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +2

Query: 557 FPLXTMGILEAGGIITSINPIYTAHEVQRXLVLSEAKIVVTLPETVAIIKEACKMAKI 730
           +P+   G+   GGI+T+INP YT  E+   L  S AK +VT+P+     K+A   A +
Sbjct: 83  YPIVFYGVTSVGGIVTTINPAYTTDEIIYQLKDSGAKYLVTVPQLAQKAKQAADQAGV 140


>SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13)
          Length = 874

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = +1

Query: 331 RYKDVEIPNSTLY-DYVWKNLERWPERTMAVCATTGRGYTYEQGFKLSNTFAANLRRKFQ 507
           ++  V IP    + +Y+ K      +RT  V   +G+ YTY +   L +  A+ L RK  
Sbjct: 6   KWPAVSIPEDVSWAEYIMKGFGVHGDRTAIVDPQSGQSYTYPELKDLIHKMASALTRK-G 64

Query: 508 VRDGDVVAVMLPNIPDFPL 564
            + G+V+A+M PNIP+F +
Sbjct: 65  FKQGEVLAIMCPNIPEFAI 83



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = +2

Query: 557 FPLXTMGILEAGGIITSINPIYTAHEVQRXLVLSEAKIVVTLPETVAIIKEACKMAKI 730
           F +     +  GGI+TS+NP+YT  EV   LV S+A  ++T+P  +    E  K A +
Sbjct: 81  FAIAYFAAILIGGIVTSMNPLYTGREVAHQLVHSQASWLLTVPPCIPRAMEGAKEAGV 138


>SB_58684| Best HMM Match : AMP-binding (HMM E-Value=0.36)
          Length = 237

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +2

Query: 557 FPLXTMGILEAGGIITSINPIYTAHEVQRXLVLSEAKIVVTLPETVAIIKEA 712
           +P+   G L  G  +T++NP YT  E+   L  S+A  ++T PE +  + +A
Sbjct: 46  YPVVCYGALSVGMRVTTLNPQYTVREMVPQLKDSQANYIITTPELIHQVNQA 97



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +1

Query: 424 ATTGRGYTYEQGFKLSNTFAANL-RRKFQVRDGDVVAVMLPNIPDFPLXDHG 576
           + TG+ +T+ +   L     + L RR  Q+  GD +AV+LPN+ ++P+  +G
Sbjct: 3   SATGKSFTFSELCTLIRKCGSVLVRRGAQI--GDTMAVILPNMIEYPVVCYG 52


>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
          Length = 757

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +2

Query: 557 FPLXTMGILEAGGIITSINPIYTAHEVQRXLVLSEAKIVVTLPETVAIIKEACKMAKID 733
           +P+   G    G ++T+ NP YT  E+   L+ S AK ++T  +      EA + A ++
Sbjct: 510 YPVYLYGAQAIGAVVTTANPGYTVDELAYQLIDSSAKYIITDSKLYHTAIEAARKANVE 568


>SB_48304| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 374

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +2

Query: 575 GILEAGGIITSINPIYTAHEVQRXLVLSEAKIVVTLPETVAIIKEACKMAKID 733
           G    GG++++ NP Y+A E+   +   +AK ++T  +      EA + A ++
Sbjct: 52  GAQAMGGVVSTANPGYSADELAYQVTDCDAKYIITNSKLYHTAIEAARKANVE 104


>SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011)
          Length = 468

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 497 LLRFAAN-VLESLKPCSYVYPRPVVAQTAIVLSGHLSKFF 381
           LLRF     L S+  C YVY   +V   A  +SG +  FF
Sbjct: 170 LLRFGVGFALASVMVCQYVYVIELVGPKARTMSGKVQDFF 209


>SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 968

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 497 LLRFAAN-VLESLKPCSYVYPRPVVAQTAIVLSGHLSKFF 381
           LLRF     L S+  C YVY   +V   A  +SG +  FF
Sbjct: 683 LLRFGVGFALASVMVCQYVYVIELVGPKARTMSGKVQDFF 722


>SB_33495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +1

Query: 433 GRGYTYEQGFKLSNTFAANLRRKFQVRDGDVVAVMLPNIPDFPL 564
           G+ +T+++  + +N  A   + +   + GDV+A++L N P+F L
Sbjct: 107 GKSWTFKEADEFANRIANYFKSQGYAK-GDVIALILENRPEFIL 149


>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1399

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = -2

Query: 530 ATTSPSRTWNFLLRFAANVLESLKPCSYVYPRPVVAQTAIVLSGHL 393
           AT S  R    +      VL SL P    YP P +      L GH+
Sbjct: 423 ATCSQKRRLTAIYNMPYTVLFSLNPLPQPYPLPAIPSATKALRGHV 468


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,635,514
Number of Sequences: 59808
Number of extensions: 450662
Number of successful extensions: 1004
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)