Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C07
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy...    32   0.63 
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ...    32   0.63 
U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U58758-13|AAB93427.1|  565|Caenorhabditis elegans Hypothetical p...    30   2.5  
Z81027-1|CAB02686.1|  566|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
           cytoplasmic polyA polymeraseprotein.
          Length = 1113

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = +1

Query: 598 YNIYKPDLYSA*SPKAXCIIRSQNRGYIAGDSGHYKGGL*DGQNRSSNHNHKNNGEVXQE 777
           YN      Y    P+     R  N GY    SG+ K    + Q    ++NH+ N    Q 
Sbjct: 41  YNQQSNHQYQQSHPRRTSFSRDGNTGYYNNHSGN-KRQTYNNQRGGRSYNHRGNSNYQQN 99

Query: 778 GXYS 789
           G YS
Sbjct: 100 GEYS 103


>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform a protein.
          Length = 1113

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = +1

Query: 598 YNIYKPDLYSA*SPKAXCIIRSQNRGYIAGDSGHYKGGL*DGQNRSSNHNHKNNGEVXQE 777
           YN      Y    P+     R  N GY    SG+ K    + Q    ++NH+ N    Q 
Sbjct: 41  YNQQSNHQYQQSHPRRTSFSRDGNTGYYNNHSGN-KRQTYNNQRGGRSYNHRGNSNYQQN 99

Query: 778 GXYS 789
           G YS
Sbjct: 100 GEYS 103


>U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical
           protein D1009.1a protein.
          Length = 655

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +1

Query: 364 LYDYVWKNLERWPERTMAVCATTGRGYTYEQGFKLSNTFAANLRRKFQVRDGDVVAVMLP 543
           +++     +++ P +   +   +GR  TY++   L+N + ANL      + GDVVA+ + 
Sbjct: 82  IHEIFLNQVKQHPNKVAIIEIESGRQLTYQELNALANQY-ANLYVSEGYKMGDVVALFME 140

Query: 544 NIPDF 558
           N  DF
Sbjct: 141 NSIDF 145


>U58758-13|AAB93427.1|  565|Caenorhabditis elegans Hypothetical
           protein ZK1127.2 protein.
          Length = 565

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = +2

Query: 557 FPLXTMGILEAGGIITSINPIYTAHEVQRXLVLSEAKIVVTLPETVAIIKEACKMAKIDL 736
           F +  + +++ GG +++ + I+T +E+Q     S   IV T  + +A I+ A        
Sbjct: 85  FLVAMLAVMKCGGAMSNASAIFTDYELQLQFCDSNTSIVFTDEDRLARIRRATAKCPGVR 144

Query: 737 PIITIKT 757
            II ++T
Sbjct: 145 KIICLRT 151


>Z81027-1|CAB02686.1|  566|Caenorhabditis elegans Hypothetical
           protein AH10.1 protein.
          Length = 566

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +2

Query: 557 FPLXTMGILEAGGIITSINPIYTAHEVQRXLVLSEAKIVVTLPETVAIIKEACKMAKIDL 736
           F +  + +++ GG +++ + I+T +E+Q     S   IV T  + +A ++ +        
Sbjct: 85  FLIAMLAVMKCGGAMSNASAIFTDYELQLQFKDSNTSIVFTDEDRLARVRRSVAKCPGVR 144

Query: 737 PIITIKT 757
            II ++T
Sbjct: 145 KIICLRT 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,647,367
Number of Sequences: 27780
Number of extensions: 328253
Number of successful extensions: 941
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)