Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C07
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   8.6  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   8.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   8.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.6  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -1

Query: 735 RSILAILQASFIMATVSGNVTTILA 661
           R+ LAIL   F +ATV GN   ILA
Sbjct: 45  RAGLAILLFLFSVATVFGNTLVILA 69


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 651 YYPKPKSWLHCRR 689
           YYP+ K WL+  R
Sbjct: 723 YYPRRKEWLYLHR 735


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 392 RDGPRGLWRSAPPQAVGT 445
           RDGP  +  S+PP+  GT
Sbjct: 127 RDGPPSVSLSSPPREPGT 144


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 655 IRSQNRGYIAGDS 693
           ++   RGY+AGDS
Sbjct: 317 VKELRRGYVAGDS 329


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 655 IRSQNRGYIAGDS 693
           ++   RGY+AGDS
Sbjct: 28  VKELRRGYVAGDS 40


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 655 IRSQNRGYIAGDS 693
           ++   RGY+AGDS
Sbjct: 260 VKELRRGYVAGDS 272


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 655 IRSQNRGYIAGDS 693
           ++   RGY+AGDS
Sbjct: 317 VKELRRGYVAGDS 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,394
Number of Sequences: 438
Number of extensions: 4424
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)