Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C06
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    44   4e-05
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    31   0.22 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    29   1.2  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    28   2.1  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    27   3.6  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = -1

Query: 757 PA*PRGP*EPFGPAIPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANP 611
           P  P  P  P  P +P +PSVP  P+ P +P +P  P  P +P++P  P
Sbjct: 614 PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAP 662



 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -1

Query: 757 PA*PRGP*EPFGPAIPGSPSVPLQPSLPGIPGLPWSPGDP*IPILP 620
           P  P  P  P  P +P +PSVP  P+ P +P +P  P  P +P++P
Sbjct: 644 PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVP 689



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -1

Query: 757 PA*PRGP*EPFGPAIPGSPSVPLQPSLPGIPGLPWSPGDP*IPILPANP 611
           P  P  P  P  P +P +PSVP  P  P  P +P  P  P +P++P  P
Sbjct: 584 PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAP 632


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 757 PA*PRGP*EPFG-PA-IPGSPSVPLQPSLPGIPGLPWSPG 644
           P  P G   P G PA  PG P+VP  P +PG    P +PG
Sbjct: 523 PMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAPG 562



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 721 PAIPGS-PSVPLQPSLPGIPGLPWSPGDP 638
           P +P   P  P  P++PGIPG    PG P
Sbjct: 533 PGMPAPFPGYPAVPAMPGIPGATAPPGAP 561



 Score = 29.1 bits (62), Expect = 0.90
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = +3

Query: 615 FAGRMGIQGSPGDQGRPGIPGRDGCNGTDGEPGIAGPKGSQGPRGYA 755
           F G   +   PG  G    PG  G   T     +  P G   P GY+
Sbjct: 539 FPGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMPNGYS 585



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = -1

Query: 748 PRGP*EPFGPAIPGSPSVPL-QPSL--PGI---PGLPWS-PGDP*IPILPANPFA 605
           P G   P  P  PG P++ + QP +  PG+   PG+P   PG P +P +P  P A
Sbjct: 500 PPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGA 554


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 739 P*EPFGPAIPGSPSVPLQPSLPGIPGLP 656
           P  PF   IP SP++P+ PS   +P  P
Sbjct: 296 PFYPFDSGIPVSPNIPVSPSSSFVPMYP 323


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +3

Query: 612 GFAGRMGIQGSPGDQGRPGIPGRDGCNGTDGEPGIAGPKGSQGPRGYA 755
           G +   G  GS  + G  G     G NG+    G  G   S G  GY+
Sbjct: 59  GSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYGATNSNGDAGYS 106


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 768 LLWIQRNHAVLENLLVQLFQVHHQFHYNHLFLVYPVY 658
           L WI  +H   EN+ + +  +   F++++ F++ PVY
Sbjct: 336 LAWIGGSHP--ENVFITIGAIATIFYFSYFFILIPVY 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,582,458
Number of Sequences: 5004
Number of extensions: 76215
Number of successful extensions: 225
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)