Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_C05
(910 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 93 4e-20
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 91 2e-19
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 89 1e-18
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.91
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 3.7
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 8.5
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 8.5
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 93.5 bits (222), Expect = 4e-20
Identities = 40/69 (57%), Positives = 58/69 (84%)
Frame = +1
Query: 106 MRYVAAYLLAVLGGKXTPAAADVEXXLSSVGIEADGEXLKKVITELNGKDVEQLIAAGRE 285
M+Y+AAYLL +GGK +P+A+D+E LS+VGIEA+ E ++ +I ELNGKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60
Query: 286 KLSSMPVGG 312
KL+++P GG
Sbjct: 61 KLATVPTGG 69
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 91.1 bits (216), Expect = 2e-19
Identities = 40/69 (57%), Positives = 58/69 (84%)
Frame = +1
Query: 106 MRYVAAYLLAVLGGKXTPAAADVEXXLSSVGIEADGEXLKKVITELNGKDVEQLIAAGRE 285
M+Y+AAYLL +GGK +P+A+D+E LS+VGIEA+ E ++ +I+ELNGK++E+LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60
Query: 286 KLSSMPVGG 312
KLS++P G
Sbjct: 61 KLSTVPSAG 69
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 88.6 bits (210), Expect = 1e-18
Identities = 38/69 (55%), Positives = 58/69 (84%)
Frame = +1
Query: 106 MRYVAAYLLAVLGGKXTPAAADVEXXLSSVGIEADGEXLKKVITELNGKDVEQLIAAGRE 285
M+Y+AAYLL +GGK +P+A+D+E LS+VGIE++ E ++ +I EL+GKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60
Query: 286 KLSSMPVGG 312
KL+++P GG
Sbjct: 61 KLATVPSGG 69
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.91
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = -3
Query: 311 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSXSPSASIPTELRXXSTSAAAGVX 150
PPTG S S P + STS+P+ T + + S +PT STS
Sbjct: 122 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT----TSTSCTTSTS 177
Query: 149 LPPSTASKYAAT 114
+PP+ S +T
Sbjct: 178 IPPTGGSSSLST 189
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = -3
Query: 311 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSXSPSASIPTELRXXSTSAA 162
PPTG S S P + STS+P+ T + + S+ +PT +TS +
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTS 234
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -3
Query: 278 PAAISCSTSLPLSSVITFLSXSPSASIPTELRXXSTSAAAGVXLPPSTASKYAAT 114
P + STS+P+ T + + S+ +PT STS +PP+ S T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPT----TSTSCTTSTSIPPTGNSTTPVT 302
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -3
Query: 290 SFSRPAAISCSTSLPLSSVITFLSXSPSASIPTELRXXSTSAAAGVXLPPSTA 132
SF P+A + S P+SS+ +F + S +++ P+ + S A P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -3
Query: 242 SSVITFLSXSPSASIP--TELRXXSTSAAAGVXLPPSTASKYAAT 114
SSV T LS S S+SIP + STS ++ +P S++S +++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 8.5
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 308 PTGIDDSFSRPAAISCSTSLPL---SSVITFLSXSPSASIPTELRXXSTSAAAGVXLPPS 138
PT S+ +++ S+S P SS +T S S S+ T STS++ S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261
Query: 137 TASKYAAT 114
TAS +++
Sbjct: 262 TASSSSSS 269
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 8.5
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +2
Query: 101 KKCVTWPRIYWLCWV 145
+K +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,363
Number of Sequences: 5004
Number of extensions: 22884
Number of successful extensions: 83
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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