Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C05
         (910 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               87   2e-17
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 40/69 (57%), Positives = 53/69 (76%)
 Frame = +1

Query: 106 MRYVAAYLLAVLGGKXTPAAADVEXXLSSVGIEADGEXLKKVITELNGKDVEQLIAAGRE 285
           MRYVAAYLLA LG    P+A D++  L SVGIE+D E L KVI+EL+GK V+++I AG+ 
Sbjct: 650 MRYVAAYLLATLGNNKNPSAKDIKGILDSVGIESDMERLNKVISELSGKSVDEIIQAGKS 709

Query: 286 KLSSMPVGG 312
           KL+++P GG
Sbjct: 710 KLATVPTGG 718


>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
 Frame = -3

Query: 314  PPPTGIDDSFSRPAAISCST-------SLPLSSVITFLSXSPSASIPTELRXXSTSAAAG 156
            P PT    SF  PAA + +T       SLP  S  TF S SP+A    +L   + +AA+ 
Sbjct: 880  PAPTAGGFSFGNPAAPAATTGGFKFGASLPAPSGFTFGSTSPAAPAFGQLATAAGTAASS 939

Query: 155  V 153
            V
Sbjct: 940  V 940


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,753,435
Number of Sequences: 59808
Number of extensions: 182623
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)