Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C05
         (910 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)       83   2e-16
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)       83   2e-16
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)       83   2e-16
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)...    80   2e-15
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)...    80   2e-15
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)       79   3e-15
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)...    65   5e-11
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)...    62   5e-10
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont...    29   3.2  
At3g63200.1 68416.m07100 patatin-related low similarity to patat...    29   4.3  

>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 38/70 (54%), Positives = 53/70 (75%)
 Frame = +1

Query: 106 MRYVAAYLLAVLGGKXTPAAADVEXXLSSVGIEADGEXLKKVITELNGKDVEQLIAAGRE 285
           M+ VAAYLLAVL GK +P +AD++  L SVG E +   ++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 286 KLSSMPVGGG 315
           KL+S+P GGG
Sbjct: 61  KLASVPSGGG 70


>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 38/70 (54%), Positives = 53/70 (75%)
 Frame = +1

Query: 106 MRYVAAYLLAVLGGKXTPAAADVEXXLSSVGIEADGEXLKKVITELNGKDVEQLIAAGRE 285
           M+ VAAYLLAVL GK +P +AD++  L SVG E +   ++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 286 KLSSMPVGGG 315
           KL+S+P GGG
Sbjct: 61  KLASVPSGGG 70


>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 38/70 (54%), Positives = 53/70 (75%)
 Frame = +1

Query: 106 MRYVAAYLLAVLGGKXTPAAADVEXXLSSVGIEADGEXLKKVITELNGKDVEQLIAAGRE 285
           M+ VAAYLLAVL GK +P +AD++  L SVG E +   ++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 286 KLSSMPVGGG 315
           KL+S+P GGG
Sbjct: 61  KLASVPSGGG 70


>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 34/70 (48%), Positives = 54/70 (77%)
 Frame = +1

Query: 106 MRYVAAYLLAVLGGKXTPAAADVEXXLSSVGIEADGEXLKKVITELNGKDVEQLIAAGRE 285
           M+  AA+LLAVLGG   P+A +++  + +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 286 KLSSMPVGGG 315
           KL+S+P GGG
Sbjct: 61  KLASVPSGGG 70


>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 34/70 (48%), Positives = 54/70 (77%)
 Frame = +1

Query: 106 MRYVAAYLLAVLGGKXTPAAADVEXXLSSVGIEADGEXLKKVITELNGKDVEQLIAAGRE 285
           M+  AA+LLAVLGG   P+A +++  + +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 286 KLSSMPVGGG 315
           KL+S+P GGG
Sbjct: 61  KLASVPSGGG 70


>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
          Length = 115

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 36/70 (51%), Positives = 51/70 (72%)
 Frame = +1

Query: 106 MRYVAAYLLAVLGGKXTPAAADVEXXLSSVGIEADGEXLKKVITELNGKDVEQLIAAGRE 285
           M+ VAA+LLAVL GK +P   D++  L SVG E +   ++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 286 KLSSMPVGGG 315
           KL+S+P GGG
Sbjct: 61  KLASVPSGGG 70


>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
           acidic ribosomal protein P2, Parthenium
           argentatum,SWISSPROT:RLA2_PARAR
          Length = 114

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 31/70 (44%), Positives = 45/70 (64%)
 Frame = +1

Query: 106 MRYVAAYLLAVLGGKXTPAAADVEXXLSSVGIEADGEXLKKVITELNGKDVEQLIAAGRE 285
           M+ VAAYLLA L G   P+ AD++  + SVG E D E +    + +  +DV +LIA GRE
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 286 KLSSMPVGGG 315
           K++++  GGG
Sbjct: 61  KMAALSSGGG 70


>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
           similar to acidic ribosomal protein P2b (rpp2b)
           GB:U62753 GI:2431770 from [Zea mays]
          Length = 115

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 30/69 (43%), Positives = 44/69 (63%)
 Frame = +1

Query: 106 MRYVAAYLLAVLGGKXTPAAADVEXXLSSVGIEADGEXLKKVITELNGKDVEQLIAAGRE 285
           M+ +AA+LLA LGG   P + D++  L SVG E D   +  + + +   DV +LIAAGRE
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 286 KLSSMPVGG 312
           K+S++  GG
Sbjct: 61  KMSALSSGG 69


>At4g29880.1 68417.m04252 leucine-rich repeat family protein
           contains leucine rich repeats, Pfam:PF00560
          Length = 404

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/78 (26%), Positives = 36/78 (46%)
 Frame = -2

Query: 324 CRCSASYWH*RQLLTSGRNKLFNILAVELSDYFLKLLTVSFDTDGAEXLLNVSGSWRGLA 145
           C+   S  H +++  S   +L N++A+++    +K L  S        +LNVSG++    
Sbjct: 79  CKLDLSNNHIKKIPESLTARLLNLIALDIHSNQIKALPNSIGCLSKLKILNVSGNFLVSL 138

Query: 144 TQHSQ*IRGHVTHFLXPN 91
            Q  Q  R H +    PN
Sbjct: 139 PQTIQNCRFHTSTKSGPN 156


>At3g63200.1 68416.m07100 patatin-related low similarity to
           patatin-like latex protein allergen Hev b 7 - Hevea
           brasiliensis, EMBL:AF113546; contains patatin domain
           PF01734
          Length = 384

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +1

Query: 175 EXXLSSVGIEADGEXLKKVITELNGKDVE----QLIAAGREKLSSMP 303
           E  L   G+E     +K+++TE NG+ +E    +L+A+G+  L   P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,787,610
Number of Sequences: 28952
Number of extensions: 130622
Number of successful extensions: 261
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)