Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C04
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.22 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   1.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.2  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 472 SHVLSCVIXLILWITVLPPLSELIPLAA 389
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 493 GLLLAFCSHVL-SCVIXLILWITVLPPLSELIPL 395
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 609 RYQAFPPGSSLVRSPVSDPAAYRIPVRL 692
           +YQ  P    +  + + DPA YRI  R+
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRI 425


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 609 RYQAFPPGSSLVRSPVSDPAAYRIPVRL 692
           +YQ  P    +  + + DPA YRI  R+
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRI 425


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 472 SHVLSCVIXLILWITVLPPLSELIPL 395
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 472 SHVLSCVIXLILWITVLPPLSELIPL 395
           S ++S  +  +L + ++PP S ++PL
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVVPL 306


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 472 SHVLSCVIXLILWITVLPPLSELIPL 395
           S ++S  +  +L + ++PP S ++PL
Sbjct: 281 SILISLHVFFLLVVEIIPPTSLVVPL 306


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 472 SHVLSCVIXLILWITVLPPLSELIPL 395
           S +LS  +  +L   ++PP S  +PL
Sbjct: 273 SILLSLTVFFLLLAEIIPPTSLTVPL 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,900
Number of Sequences: 438
Number of extensions: 4742
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)