Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C03
         (899 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    26   0.35 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   3.3  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.3  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +3

Query: 486 RPCTRPST--HY*SFICQHSCDCFVQHRLPTKICGHCYPM 599
           +P T P T  H    I Q SC   +Q  L  KI  H YP+
Sbjct: 127 KPPTLPVTSIHLRGAIGQRSCQVVIQCYLEIKIDEHLYPV 166


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 677 FPVTSAGMLWLICSSTV 727
           F V   G +WL+ SSTV
Sbjct: 489 FLVNDFGFIWLVLSSTV 505


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +2

Query: 146 GXCHQNACCNXPSWGXXC*LPXG 214
           G CH N  C     G  C  P G
Sbjct: 267 GACHNNGTCLDKVGGFECKCPPG 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,840
Number of Sequences: 336
Number of extensions: 3854
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)