Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C03
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   131   1e-31
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   130   3e-31
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    41   3e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.6  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.6  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   2.7  
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    27   4.8  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   6.3  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    26   8.4  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  131 bits (317), Expect = 1e-31
 Identities = 63/101 (62%), Positives = 74/101 (73%)
 Frame = +1

Query: 472 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 651
           L++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAR
Sbjct: 123 LIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAR 182

Query: 652 EVLRLRGVLPRDQRWDVVVDLFFYRDPEXSEKDEXQAKXQA 774
           EVLR+RG L R   WDV+ DL+FYRDPE  E++E   K  A
Sbjct: 183 EVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKKAAA 223



 Score =  125 bits (301), Expect = 1e-29
 Identities = 59/118 (50%), Positives = 76/118 (64%)
 Frame = +3

Query: 117 GGXAVLALNXXAVTKMLAATXXLGAXXVNFQXEXYVYKRRADGTHVXNLRRTWXKXXXXX 296
           G   +L      + ++LAA   +G+  +  + + YV+KRR+DG H+ NL +TW K     
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 297 XXXXXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 470
                IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPR
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPR 122


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  130 bits (314), Expect = 3e-31
 Identities = 63/115 (54%), Positives = 76/115 (66%)
 Frame = +3

Query: 126 AVLALNXXAVTKMLAATXXLGAXXVNFQXEXYVYKRRADGTHVXNLRRTWXKXXXXXXXX 305
           +VL      +  +LAA   +G+  +  + E YV+KRR+DG H+ NL +TW K        
Sbjct: 9   SVLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVI 68

Query: 306 XXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 470
             IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPR
Sbjct: 69  ATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPR 123



 Score =  128 bits (308), Expect = 1e-30
 Identities = 61/96 (63%), Positives = 72/96 (75%)
 Frame = +1

Query: 472 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 651
           L+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAR
Sbjct: 124 LIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAR 183

Query: 652 EVLRLRGVLPRDQRWDVVVDLFFYRDPEXSEKDEXQ 759
           EVLRLRG + R   W+V+ DL+FYRDPE  E++E Q
Sbjct: 184 EVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 23/74 (31%), Positives = 37/74 (50%)
 Frame = +1

Query: 430 LLLTRSKLHSVNLXLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 609
           L+ T  K   V   L+++L+P ++     EA   ++P I + +TD+  R V   IP N  
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227

Query: 610 SSHSIGLMWWLLAR 651
           S     L+  LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -1

Query: 716 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 618
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 514 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 624
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 169  LQPPXLGXXXLTSXWXPMST-NXVLMVPMXSTCVVPGXNLFWLLVL 303
            LQ   L    +   W  + T N V  + +  T   PG N FW L++
Sbjct: 902  LQKKELSILEMEKIWYVIMTLNPVFQIGLNGTTHSPGNNSFWPLII 947


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +1

Query: 235 VLMVPMXSTCVVPGXNLFWL----LVLS*PSRTPLMCSSSHHGPSVSVLY*SLPR 387
           VL V   S  +VPG  L W+    L +   +R   +C+ S  G S  VLY  L R
Sbjct: 285 VLRVDSFSKLIVPGLRLGWITGNSLFIDRITRYAEVCTESPSGVSQVVLYAILNR 339


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 622 IGLMWWLLAREVLRLRGVLPRDQRWD 699
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = -3

Query: 336 RTHQRGSRWLRQHEQPEQVXPRYDA 262
           R H++ + W ++HE+P+ +   +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,256
Number of Sequences: 5004
Number of extensions: 56778
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)