Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C03
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   130   2e-30
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   128   4e-30
06_03_0543 + 21967787-21970261                                         29   6.7  
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119...    28   8.8  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  130 bits (313), Expect = 2e-30
 Identities = 57/100 (57%), Positives = 75/100 (75%)
 Frame = +1

Query: 472 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 651
           LLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR
Sbjct: 125 LLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLAR 184

Query: 652 EVLRLRGVLPRDQRWDVVVDLFFYRDPEXSEKDEXQAKXQ 771
            VL++RG +    +WDV+VDLFFYRDPE +++ E +A  Q
Sbjct: 185 MVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224



 Score =  128 bits (310), Expect = 4e-30
 Identities = 68/132 (51%), Positives = 81/132 (61%), Gaps = 1/132 (0%)
 Frame = +3

Query: 105 AXXSGGXA-VLALNXXAVTKMLAATXXLGAXXVNFQXEXYVYKRRADGTHVXNLRRTWXK 281
           A  +GG A  L+     V  MLAA   LG    +FQ E YVYKRR+DG ++ NL +TW K
Sbjct: 2   AAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEK 61

Query: 282 XXXXXXXXXXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFR 461
                     IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F 
Sbjct: 62  LQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFS 121

Query: 462 EPRSLDCIRPCT 497
           EPR L    P T
Sbjct: 122 EPRLLILTDPRT 133


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  128 bits (310), Expect = 4e-30
 Identities = 67/129 (51%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
 Frame = +3

Query: 117 GGXAVLALNXXA--VTKMLAATXXLGAXXVNFQXEXYVYKRRADGTHVXNLRRTWXKXXX 290
           GG A  AL+     +  MLAA   LG    +FQ E YVYKRR DG ++ NL +TW K   
Sbjct: 5   GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64

Query: 291 XXXXXXXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 470
                  IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPR
Sbjct: 65  AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPR 124

Query: 471 SLDCIRPCT 497
            L    P T
Sbjct: 125 LLILTDPRT 133



 Score =  127 bits (306), Expect = 1e-29
 Identities = 55/96 (57%), Positives = 72/96 (75%)
 Frame = +1

Query: 472 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 651
           LLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR
Sbjct: 125 LLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLAR 184

Query: 652 EVLRLRGVLPRDQRWDVVVDLFFYRDPEXSEKDEXQ 759
            VL++RG +    +WDV+VDLFFYRDPE +++ E +
Sbjct: 185 MVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 628 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 717
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>08_01_0152 -
           1190358-1190462,1190648-1190765,1191134-1192691,
           1193338-1193530
          Length = 657

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -3

Query: 381 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVXPRYDAS*XHGYHQHXVC 226
           + SV + D+  ++  RT  RGS  L    QPE + PRY+       H   VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,304,549
Number of Sequences: 37544
Number of extensions: 438770
Number of successful extensions: 1035
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)