Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_C03
(899 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 156 3e-38
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.034
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20) 33 0.31
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037) 31 1.7
SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4) 30 2.2
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.9
SB_588| Best HMM Match : p450 (HMM E-Value=0.17) 29 3.9
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 6.8
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 156 bits (378), Expect = 3e-38
Identities = 74/121 (61%), Positives = 88/121 (72%)
Frame = +3
Query: 114 SGGXAVLALNXXAVTKMLAATXXLGAXXVNFQXEXYVYKRRADGTHVXNLRRTWXKXXXX 293
SGG +L L V K LAA LGA +FQ E YVYKR++DG ++ N+++TW K
Sbjct: 2 SGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLLA 61
Query: 294 XXXXXXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRS 473
IENPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 62 ARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRL 121
Query: 474 L 476
L
Sbjct: 122 L 122
Score = 154 bits (374), Expect = 8e-38
Identities = 69/97 (71%), Positives = 80/97 (82%)
Frame = +1
Query: 472 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 651
LLIV DP DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+WLLAR
Sbjct: 121 LLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAR 180
Query: 652 EVLRLRGVLPRDQRWDVVVDLFFYRDPEXSEKDEXQA 762
EVLR+RG + R W+++ DL+FYRDPE +EK+E A
Sbjct: 181 EVLRMRGSISRALPWEIMPDLYFYRDPEEAEKEEQAA 217
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 36.3 bits (80), Expect = 0.034
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -1
Query: 713 KSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 546
K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453
Query: 545 ITGMLTY 525
G +TY
Sbjct: 1454 ELGTMTY 1460
>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
Length = 428
Score = 33.1 bits (72), Expect = 0.31
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 412 DVSHQVLLLTRSKLHSVNLXLLIVLDPAQDHQPITEASYVNIPVIALC-NTDSPLRFVDI 588
++ +VL +L N +++ +D A H P + +Y NI +I L NT S + +D
Sbjct: 240 EIMQEVLAKLNRRLKRENRNIMLFMDNAPCHTPSLKNTYCNIKIIFLSKNTTSKTQPLDS 299
Query: 589 AIPCNTK 609
I N K
Sbjct: 300 GIIANWK 306
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 465 PRSLDCIRPCTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYP 596
P + DCI C+ PS F C+ +C T++C +C+P
Sbjct: 879 PSANDCIT-CSDPSNALIGFTCKANCTPGQFKNTATRVCENCHP 921
>SB_57493| Best HMM Match : Surf_Ag_VNR (HMM E-Value=0.00037)
Length = 432
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 484 LDPAQDHQPITEASYVNIPVIALCNTDSPLRF 579
LDP +HQPIT+ + I ++A TD+PL+F
Sbjct: 119 LDPDVEHQPITDRAEACICLVA---TDAPLKF 147
>SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)
Length = 158
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/57 (29%), Positives = 33/57 (57%)
Frame = +1
Query: 310 PSRTPLMCSSSHHGPSVSVLY*SLPRTPVLRLLRDVSHQVLLLTRSKLHSVNLXLLI 480
PSRTPL ++ +G +S+ Y VLR+ R H ++ ++R L ++N+ +++
Sbjct: 49 PSRTPLSQHNNGYGLRISI-YAVRYTAMVLRINRFALHIIVTVSRITLSAINVTVIL 104
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -1
Query: 725 R*KNKSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVL 555
R N+ T ++ STP + + N+ ++P EW ++ H + L+GES
Sbjct: 3 RGSNRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKY 62
Query: 554 HKAITG 537
+TG
Sbjct: 63 EFTLTG 68
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 616 HSIGLMWWLLAREVLRLRGVLP 681
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_588| Best HMM Match : p450 (HMM E-Value=0.17)
Length = 304
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 370 Y*SLPRTPVLRLLRDVSHQVLLLTRSKLHSVNLXLLIVLDPAQDHQPITEASYVNIPVIA 549
Y +P PV R S V + + +L +N I+ + +Q++ P+ Y +IP +A
Sbjct: 36 YKEIPGPPVERFF---SGHVPIFNQGRLRGLNFYQ-ILWEISQEYSPVILLWYYHIPFVA 91
Query: 550 LC 555
LC
Sbjct: 92 LC 93
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 726 TVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 577
+V Q+ + P +T HT+ T P HQ + +GR G DSNV +
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,895,488
Number of Sequences: 59808
Number of extensions: 501753
Number of successful extensions: 1053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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