Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_C03
(899 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 137 1e-32
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 129 3e-30
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 122 3e-28
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 31 1.4
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa... 29 5.6
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 28 7.3
At5g04460.1 68418.m00443 expressed protein 28 9.7
At4g26490.1 68417.m03812 expressed protein 28 9.7
At2g22340.1 68415.m02651 hypothetical protein 28 9.7
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 137 bits (331), Expect = 1e-32
Identities = 65/130 (50%), Positives = 85/130 (65%), Gaps = 3/130 (2%)
Frame = +1
Query: 472 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 651
LLI+ DP DHQPI E + NIP+IA C+TDSP+RFVDI IP N K HSIG ++WLLAR
Sbjct: 125 LLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLAR 184
Query: 652 EVLRLRGVLPRDQRWDVVVDLFFYRDPEXSE-KDEXQAKXQAVVPXKPXXXAPV--HEXW 822
VL++RG + Q+WDV+VDLFFYR+PE ++ +DE +A QA P + + W
Sbjct: 185 MVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQAEYGALPAPEYGMVGGDQW 244
Query: 823 NEXXXPXXSW 852
P +W
Sbjct: 245 TTAQIPDAAW 254
Score = 125 bits (301), Expect = 5e-29
Identities = 64/128 (50%), Positives = 76/128 (59%)
Frame = +3
Query: 114 SGGXAVLALNXXAVTKMLAATXXLGAXXVNFQXEXYVYKRRADGTHVXNLRRTWXKXXXX 293
S A L+ V M AA LG N+Q E YV+KRR DG ++ NL +TW K
Sbjct: 6 SASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMA 65
Query: 294 XXXXXXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRS 473
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPR
Sbjct: 66 ARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRL 125
Query: 474 LDCIRPCT 497
L P T
Sbjct: 126 LILTDPRT 133
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 129 bits (311), Expect = 3e-30
Identities = 58/102 (56%), Positives = 77/102 (75%), Gaps = 1/102 (0%)
Frame = +1
Query: 472 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 651
LLI+ DP DHQPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR
Sbjct: 126 LLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLAR 185
Query: 652 EVLRLRGVLPRDQRWDVVVDLFFYRDPEXSEKD-EXQAKXQA 774
VL++RG + Q+WDV+VDLFFYR+PE ++++ + +A+ QA
Sbjct: 186 MVLQMRGTILAAQKWDVMVDLFFYREPEEAKQEGDEEAEVQA 227
Score = 122 bits (294), Expect = 3e-28
Identities = 59/115 (51%), Positives = 72/115 (62%)
Frame = +3
Query: 153 VTKMLAATXXLGAXXVNFQXEXYVYKRRADGTHVXNLRRTWXKXXXXXXXXXXIENPADV 332
+ ML+A LG N+Q E YV+KRR DG ++ NL +TW K IENP D+
Sbjct: 20 IQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENPKDI 79
Query: 333 FVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRSLDCIRPCT 497
V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPR L P T
Sbjct: 80 IVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRT 134
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 122 bits (294), Expect = 3e-28
Identities = 59/115 (51%), Positives = 72/115 (62%)
Frame = +3
Query: 153 VTKMLAATXXLGAXXVNFQXEXYVYKRRADGTHVXNLRRTWXKXXXXXXXXXXIENPADV 332
+ ML+A LG N+Q E YV+KRR DG ++ NL +TW K IENP D+
Sbjct: 20 IQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENPKDI 79
Query: 333 FVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRSLDCIRPCT 497
V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPR L P T
Sbjct: 80 IVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRT 134
Score = 106 bits (255), Expect = 2e-23
Identities = 47/80 (58%), Positives = 59/80 (73%)
Frame = +1
Query: 472 LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 651
LLI+ DP DHQPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR
Sbjct: 126 LLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLAR 185
Query: 652 EVLRLRGVLPRDQRWDVVVD 711
VL++RG + Q+WDV+V+
Sbjct: 186 MVLQMRGTILAAQKWDVMVN 205
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 475 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 615
++V D + I EAS + IPV+A+ + + PL F + I P + S
Sbjct: 134 VVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181
>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
family protein contains Pfam domain, PF01190: Pollen
proteins Ole e I family
Length = 146
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 562 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 699
D L ++A+ C TKS + + ++ V + +P +RWD
Sbjct: 49 DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 248 PCXQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 370
P Q Y GK + + + R V HL+ ALR CC
Sbjct: 38 PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78
>At5g04460.1 68418.m00443 expressed protein
Length = 863
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 409 RDVSHQVLLLTRSKLHSVNLXLLIVLDPAQDHQPI 513
RD HQV + ++L+ +N L+ PA QPI
Sbjct: 681 RDTDHQVFVRNDNQLNGINGSQLLPTPPAPPPQPI 715
>At4g26490.1 68417.m03812 expressed protein
Length = 200
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 487 LIQSRXRGSRNAAWIWLVKAPGVKRPAIGVAPVCAANFST 368
+I + R SR + WIW V RP I V + AN T
Sbjct: 23 VILRQPRSSRTSLWIWCVAVFLAIRPRIPVFDIPNANLHT 62
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +2
Query: 182 SWGXXC*LPXGXLCLQTXC*WYPCXQLASYLGKTCSGCSC 301
SW LP G +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,277,686
Number of Sequences: 28952
Number of extensions: 328387
Number of successful extensions: 742
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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