Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C01
         (889 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   2.4  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   2.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   4.2  

>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 321 KSSCGIYTGIHALF 362
           K  C +YT IH LF
Sbjct: 11  KDPCDVYTAIHPLF 24


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 321 KSSCGIYTGIHALF 362
           K  C +YT IH LF
Sbjct: 11  KDPCDVYTAIHPLF 24


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -3

Query: 566 RHSTGEVFFYSXGXGNVSXQLTWAKFHQGTS 474
           RHS   V       G  S    W KF +GT+
Sbjct: 244 RHSKQNVALLCPAQGFPSPSFRWYKFVEGTT 274


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,440
Number of Sequences: 336
Number of extensions: 2675
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)