Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_C01
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0040 - 13999040-13999179,13999524-13999638,13999759-139998...    29   3.7  
01_06_1815 - 40064351-40064887,40064987-40065634,40065834-400658...    29   4.9  

>03_03_0040 -
           13999040-13999179,13999524-13999638,13999759-13999818,
           14000007-14000060,14000274-14000333,14000418-14000480,
           14000552-14000595,14000671-14000755,14000904-14001028,
           14001368-14001432,14001460-14001518,14001678-14001743,
           14001870-14001935,14002019-14002105,14002168-14002257,
           14002378-14002440,14003153-14003419
          Length = 502

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +3

Query: 204 SSYLARGSIKMSFGRICIGFTSG 272
           S +LA+G I + FGRI +GF++G
Sbjct: 164 SLHLAKGVIMLYFGRILLGFSTG 186


>01_06_1815 -
           40064351-40064887,40064987-40065634,40065834-40065890,
           40065921-40065941,40066714-40066941
          Length = 496

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 93  KSLVFVLILICSVVGQQFRYDYTYFXEYQRVVEASGDSSYLARGSIKMSFGRICIGFTSG 272
           ++L+  L+    V+   F Y  TY   YQR+ + +   S  ++GS           F+SG
Sbjct: 277 RTLIDFLVSAVIVMSACFGYG-TYIYSYQRITDVTSACSATSKGSKSWWMPNSVSNFSSG 335

Query: 273 RCFKKQH 293
             F + H
Sbjct: 336 FLFLRCH 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,296,348
Number of Sequences: 37544
Number of extensions: 284792
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)