Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_B23
(1277 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.49
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 31 2.6
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 29 6.0
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.1
SB_22536| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 8.0
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 8.0
>SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 33.1 bits (72), Expect = 0.49
Identities = 20/58 (34%), Positives = 24/58 (41%)
Frame = -3
Query: 1032 GXVXGXGGGXGXGGXGEVXPXXIGAXXXGAVGXRXR*GXXGE*RRXNGLGELLXXGXG 859
G + G GG G GG G + IGA G +G G G GLG + G G
Sbjct: 199 GGIGGLGGLGGLGGLGVIGTGVIGAGAVGGLGGLGGLGGVGGLGGVGGLGGIGGLGGG 256
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 31.5 bits (68), Expect = 1.5
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 926 RXRXPTAPXXXAPIXXGXTSPXPPXPXPPPXP 1021
R + P P P SP PP P PPP P
Sbjct: 1153 RDQIPPPPPPPPPPPPSSPSPPPPPPPPPPPP 1184
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 30.7 bits (66), Expect = 2.6
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 908 SPXLPXRXRXPTAPXXXAPIXXGXTSPXPPXPXPPPXP 1021
SP P P+ P P P PP P PPP P
Sbjct: 377 SPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPP 414
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +2
Query: 911 PXLPXRXRXPTAPXXXAPIXXGXTSPXPPXPXPPPXP 1021
P P P P P P PP P PPP P
Sbjct: 370 PPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPP 406
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +2
Query: 911 PXLPXRXRXPTAPXXXAPIXXGXTSPXPPXPXPPPXP 1021
P P P P +P P PP P PPP P
Sbjct: 372 PPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPP 408
Score = 29.1 bits (62), Expect = 8.0
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +2
Query: 911 PXLPXRXRXPTAPXXXAPIXXGXTSPXPPXPXPPPXP 1021
P P P P P +P PP P PPP P
Sbjct: 395 PPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPP 431
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 30.3 bits (65), Expect = 3.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 938 PTAPXXXAPIXXGXTSPXPPXPXPPPXP 1021
P+ P PI P PP P PPP P
Sbjct: 667 PSIPIQILPIPIQTMVPPPPPPPPPPPP 694
>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 30.3 bits (65), Expect = 3.4
Identities = 18/53 (33%), Positives = 19/53 (35%)
Frame = -3
Query: 1068 GWXRGXRDXGXWGXVXGXGGGXGXGGXGEVXPXXIGAXXXGAVGXRXR*GXXG 910
GW RG G G G GGG G G G + G G R G G
Sbjct: 118 GWRRGGVQRGGRGGWRGRGGGEGNGAGGGIGRGGGRGRGGGEGGWGGRGGNGG 170
Score = 29.5 bits (63), Expect = 6.0
Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = -3
Query: 1071 GGWXRGXRDXGXWGXVXGXGG--GXGXGGXGEVXPXXIGAXXXGAVGXRXR*GXXGE*RR 898
GG RG + G WG G GG G G GG G G+ G G G E R
Sbjct: 151 GGRGRGGGEGG-WGGRGGNGGGRGGGEGGGGRGRGTGGGSRGGGGDGRGRGRGGTEERTR 209
Query: 897 XNGLG 883
G G
Sbjct: 210 IEGYG 214
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 30.3 bits (65), Expect = 3.4
Identities = 20/71 (28%), Positives = 26/71 (36%)
Frame = +3
Query: 852 ARXXXPXLTTPQARSPASTHXXCLXGXAXPPHLPXRLLXPXXXLHRXXRXXFXPXPXPPL 1031
AR P T P+ SP ++H PP P + P H+ R P P P
Sbjct: 379 ARMPPPGATHPRVPSPGASHPR-----VPPPGAPHPRVPPPGASHQRVRPPGAPHPRVPP 433
Query: 1032 PXXXNLXFHXP 1064
P + F P
Sbjct: 434 PGAPHPRFPPP 444
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 908 SPXLPXRXRXPTAPXXXAPIXXGXTSPXPPXPXPPP 1015
+P P +AP P G P PP P PPP
Sbjct: 289 APVPPPPPADGSAPAPPPPPPPGGAPPPPPPPPPPP 324
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 25.0 bits (52), Expect(2) = 7.1
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = +2
Query: 917 LPXRXRXPTAPXXXAPIXXGXTSPXPPXPXPPP 1015
+P P AP P PP P PPP
Sbjct: 87 MPTSCAPACPPACCAPPPPPPPPPPPPPPPPPP 119
Score = 22.6 bits (46), Expect(2) = 7.1
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 992 PPXPXPPPXP 1021
PP P PPP P
Sbjct: 139 PPPPPPPPAP 148
>SB_22536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 29.1 bits (62), Expect = 8.0
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -3
Query: 1074 FGGWXRGXRDXGXWGXVXGXGGGXGXGGXG 985
FGGW G D G G GGG GG G
Sbjct: 275 FGGWGGGSEDNG----ASGGGGGYSGGGSG 300
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +2
Query: 902 LYSPXLPXRXRXPTAPXXXAPIXXGXTSPXPPXPXPPPXP 1021
LY P P P AP P P PP P PP P
Sbjct: 160 LYPP--PPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPP 197
Score = 29.1 bits (62), Expect = 8.0
Identities = 12/38 (31%), Positives = 14/38 (36%)
Frame = +2
Query: 908 SPXLPXRXRXPTAPXXXAPIXXGXTSPXPPXPXPPPXP 1021
+P P P P P +P PP P PP P
Sbjct: 192 NPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYPPPPNAP 229
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 29.1 bits (62), Expect = 8.0
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 938 PTAPXXXAPIXXGXTSPXPPXPXPPPXP 1021
P P P SP PP P PPP P
Sbjct: 208 PPRPPPSPPPPPPPPSPSPPRPPPPPPP 235
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 29.1 bits (62), Expect = 8.0
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 938 PTAPXXXAPIXXGXTSPXPPXPXPPPXP 1021
P A P G P PP P PPP P
Sbjct: 182 PLAAASPPPPSGGPPPPPPPPPPPPPPP 209
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,212,632
Number of Sequences: 59808
Number of extensions: 161733
Number of successful extensions: 889
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 4022976485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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