Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_B23
(1277 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 36 0.047
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 31 1.3
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 31 1.8
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 31 1.8
U28731-8|AAA68300.2| 113|Caenorhabditis elegans Hypothetical pr... 29 5.3
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 5.3
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 5.3
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 5.3
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 7.1
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 7.1
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 29 9.3
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 36.3 bits (80), Expect = 0.047
Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Frame = -3
Query: 1071 GGWXRGXRDXGXWGXVXGXG----GGXGXGGXGEVXPXXIGAXXXGAVGXRXR*GXXG 910
G W G + G WG G G GG G GG G P G G G R G G
Sbjct: 113 GNWGGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGG 170
Score = 33.5 bits (73), Expect = 0.33
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -3
Query: 1071 GGWXRGX-RDXGXWGXVXGXGGGXGXGGXG 985
GGW RG R G WG G GG G G G
Sbjct: 55 GGWGRGGGRGGGDWGGNNGGGGNWGGNGGG 84
Score = 30.3 bits (65), Expect = 3.1
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -3
Query: 1071 GGWXRGXRDXGXWGXVXGXGGGXGXGGXG 985
GGW G G WG GGG G GG G
Sbjct: 23 GGWGGGPGRWGGWGG-NRWGGGGGPGGWG 50
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical protein
F58E10.3a protein.
Length = 561
Score = 31.5 bits (68), Expect = 1.3
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 1071 GGWXRGXRDXGXWGXVXGXGGGXGXGGXG 985
GG+ G R G G G GGG G GG G
Sbjct: 22 GGYGGGGRGGGGGGYSGGRGGGYGGGGGG 50
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical protein
B0280.13 protein.
Length = 616
Score = 31.1 bits (67), Expect = 1.8
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +2
Query: 908 SPXLPXRXRXPTAPXXXAPIXXGXTSPXPPXPXPPPXP 1021
SP + P P PI + P PP P PPP P
Sbjct: 486 SPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPPP 523
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 31.1 bits (67), Expect = 1.8
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = -3
Query: 1074 FGGWXRGXRDXGXWGXVXGXGGGXGXGGXGEVXPXXIGAXXXGAVG 937
+GG G D G +G GGG G GG G G G G
Sbjct: 152 YGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYG 197
>U28731-8|AAA68300.2| 113|Caenorhabditis elegans Hypothetical protein
F12A10.7 protein.
Length = 113
Score = 29.5 bits (63), Expect = 5.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 1083 QQXFGGWXRGXRDXGXWGXVXGXGGGXGXGGXG 985
++ +GGW G G G G GGG G G G
Sbjct: 47 EKRYGGWGGGYPYGGYGGYGGGYGGGYGGGYGG 79
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.5 bits (63), Expect = 5.3
Identities = 27/104 (25%), Positives = 33/104 (31%), Gaps = 5/104 (4%)
Frame = -3
Query: 1071 GGWXRGXRDXGXWGXVXGXGGGXGXGGXGEVXPXXIGAXXXGAVGXRXR*GXXG-----E 907
GG+ G G WG GG GG G G G G + G G +
Sbjct: 217 GGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQ 276
Query: 906 *RRXNGLGELLXXGXGXWRXREVXXQVPGGVGRXXXNVXKXXWG 775
+ G G+ G G W + Q GG G WG
Sbjct: 277 QQGGGGWGQQGGGGQGGWGGPQ--QQQQGGWGGPQQGGGGGGWG 318
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -3
Query: 1071 GGWXRGXRDX-GXWGXVXGXGGGXGXGGXGE 982
GGW + G WG GGG G GG G+
Sbjct: 292 GGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQ 322
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.5 bits (63), Expect = 5.3
Identities = 27/104 (25%), Positives = 33/104 (31%), Gaps = 5/104 (4%)
Frame = -3
Query: 1071 GGWXRGXRDXGXWGXVXGXGGGXGXGGXGEVXPXXIGAXXXGAVGXRXR*GXXG-----E 907
GG+ G G WG GG GG G G G G + G G +
Sbjct: 179 GGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQ 238
Query: 906 *RRXNGLGELLXXGXGXWRXREVXXQVPGGVGRXXXNVXKXXWG 775
+ G G+ G G W + Q GG G WG
Sbjct: 239 QQGGGGWGQQGGGGQGGWGGPQ--QQQQGGWGGPQQGGGGGGWG 280
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -3
Query: 1071 GGWXRGXRDX-GXWGXVXGXGGGXGXGGXGE 982
GGW + G WG GGG G GG G+
Sbjct: 254 GGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQ 284
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.5 bits (63), Expect = 5.3
Identities = 27/104 (25%), Positives = 33/104 (31%), Gaps = 5/104 (4%)
Frame = -3
Query: 1071 GGWXRGXRDXGXWGXVXGXGGGXGXGGXGEVXPXXIGAXXXGAVGXRXR*GXXG-----E 907
GG+ G G WG GG GG G G G G + G G +
Sbjct: 217 GGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQ 276
Query: 906 *RRXNGLGELLXXGXGXWRXREVXXQVPGGVGRXXXNVXKXXWG 775
+ G G+ G G W + Q GG G WG
Sbjct: 277 QQGGGGWGQQGGGGQGGWGGPQ--QQQQGGWGGPQQGGGGGGWG 318
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -3
Query: 1071 GGWXRGXRDX-GXWGXVXGXGGGXGXGGXGE 982
GGW + G WG GGG G GG G+
Sbjct: 292 GGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQ 322
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -3
Query: 1071 GGWXRGXRDX-GXWGXVXGXGGGXGXGGXGE 982
GGW + G WG GGG G GG G+
Sbjct: 255 GGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQ 285
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.1 bits (62), Expect = 7.1
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -3
Query: 1071 GGWXRGXRDX-GXWGXVXGXGGGXGXGGXGE 982
GGW + G WG GGG G GG G+
Sbjct: 293 GGWGGPQQQQQGGWGGPQQGGGGGGWGGQGQ 323
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 28.7 bits (61), Expect = 9.3
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +2
Query: 899 RLYSPXLPXRXRXPTAPXXXAPIXXGXTSPXPPXPXPPPXP 1021
RL P P + +P P+ SP P PPP P
Sbjct: 1691 RLIRPITPAQPPITQSPVPSEPVVVRTPSPVPQPTPPPPPP 1731
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,821,636
Number of Sequences: 27780
Number of extensions: 131264
Number of successful extensions: 822
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3568584636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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