Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B22
         (985 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0RU26 Cluster: Putative uncharacterized protein; n=1; ...    39   0.17 
UniRef50_A6G3D3 Cluster: Putative two component sensor serine/th...    36   2.1  

>UniRef50_Q0RU26 Cluster: Putative uncharacterized protein; n=1;
           Frankia alni ACN14a|Rep: Putative uncharacterized
           protein - Frankia alni (strain ACN14a)
          Length = 1346

 Score = 39.1 bits (87), Expect = 0.17
 Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +2

Query: 191 SGGGLPPGGATAVKTICEDEE-WGNESEAMPGXPRTPSSXGXRPASXGRRLPXFWG 355
           +G  LP   A A  T     E  G E+ A PG P   S    RP S   RLP  WG
Sbjct: 470 AGTDLPRSSADATSTTAAGAEVTGGETNAPPGGPPVTSGTTLRPTSTAGRLPRVWG 525


>UniRef50_A6G3D3 Cluster: Putative two component sensor
           serine/threonine kinase; n=1; Plesiocystis pacifica
           SIR-1|Rep: Putative two component sensor
           serine/threonine kinase - Plesiocystis pacifica SIR-1
          Length = 1067

 Score = 35.5 bits (78), Expect = 2.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 83  HXTRVYKLNLYSPNVVMDXSVMWMWLSYLKELEVA 187
           H  R+Y L++  PN+++D      W+ YL ++++A
Sbjct: 290 HERRIYHLDVNPPNILLDRDTSGRWVGYLADIDIA 324


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,876,691
Number of Sequences: 1657284
Number of extensions: 8257171
Number of successful extensions: 18033
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17724
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 92264799902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)