Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B22
         (985 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.2  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           22   9.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   9.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 191 SGGGLPPGGATAVKTICEDEEWGNESEAMPGXP 289
           +GG L PG A A K     ++W   + +  G P
Sbjct: 67  AGGALFPGMAAAGKGAARSDDWLANANSPVGSP 99


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 562 PXKXXXPXXNXGNPXGYPQNSPPXXXP 642
           P +   P  + G P G P  +PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 903 PPFXXRGNPPXPGXXPP 953
           P    RG+PP P   PP
Sbjct: 31  PQAPQRGSPPNPSQGPP 47


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 244 GRGMGKRERGDAGRXSHAKLXG 309
           GRG G +  G  G   H K+ G
Sbjct: 3   GRGKGGKGLGKGGAKRHRKVLG 24


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 242 EDEEWGNESEA 274
           E+EEW NE+E+
Sbjct: 342 EEEEWENENES 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,323
Number of Sequences: 438
Number of extensions: 2890
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32532591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)