Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B22
         (985 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59218.1 68414.m06674 disease resistance protein (CC-NBS-LRR ...    31   1.6  
At1g58848.1 68414.m06661 disease resistance protein (CC-NBS-LRR ...    31   1.6  
At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR ...    30   2.7  
At1g58807.1 68414.m06660 disease resistance protein (CC-NBS-LRR ...    28   8.3  

>At1g59218.1 68414.m06674 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1049

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 179 EVACSGGGLPPGGATAVKTICEDEEWGNESEAMP 280
           E+ CS GG P     ++K + E E+W  E  +MP
Sbjct: 817 EMVCSSGGFPQLQKLSIKGLEEWEDWKVEESSMP 850


>At1g58848.1 68414.m06661 disease resistance protein (CC-NBS-LRR
           class), putative / PRM1 homolog, putative similar to
           disease resistance protein rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631;
          Length = 941

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 179 EVACSGGGLPPGGATAVKTICEDEEWGNESEAMP 280
           E+ CS GG P     ++K + E E+W  E  +MP
Sbjct: 709 EMVCSSGGFPQLQKLSIKGLEEWEDWKVEESSMP 742


>At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 906

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 128 VMDXSVMWMWLSYLKELEVACSGGGLPPGGATAVKTICEDEEWGNESEAMP 280
           ++   V+ +W +      + C+GGG PP     +  +   EEW  E  +MP
Sbjct: 776 LLQLKVVSLWYNAYVGRRMVCTGGGFPPLHRLEIWGLDALEEWIVEEGSMP 826


>At1g58807.1 68414.m06660 disease resistance protein (CC-NBS-LRR
            class), putative / PRM1 homolog, putative similar to
            disease resistance protein rpp8 [Arabidopsis thaliana]
            gi|3901294|gb|AAC78631; identical to cDNA RF45 mRNA for
            PRM1 homolog, partial cds GI:6520196
          Length = 1017

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 182  VACSGGGLPPGGATAVKTICEDEEWGNESEAMP 280
            + CSGGG P     ++  + E EEW  E  +MP
Sbjct: 906  MVCSGGGFPQLQKLSIYRLEEWEEWIVEQGSMP 938


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,199,892
Number of Sequences: 28952
Number of extensions: 188120
Number of successful extensions: 403
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2392460208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)