Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B21
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   158   1e-39
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    57   4e-09
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    37   0.003
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   8.5  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  158 bits (383), Expect = 1e-39
 Identities = 84/128 (65%), Positives = 95/128 (74%), Gaps = 3/128 (2%)
 Frame = +2

Query: 341 QFED--NLPPILNALEVX-NRSPRLVLEVAXHLGXXXVRTXAMDGTEGLVRGQXVLDSGS 511
           QFED  +LP ILNALEV    + RLVLEVA H+G   VRT AMDGTEGLVRG  V+D+GS
Sbjct: 68  QFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGS 127

Query: 512 PIRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPEFVDXSVQXXXLVTGIKVV 691
           PI IPVG  TLGRI+ VIGEP+DERGPI   K + IHA+AP F + S     L TGIKVV
Sbjct: 128 PISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVV 187

Query: 692 DLLAPYAK 715
           DLLAPYA+
Sbjct: 188 DLLAPYAR 195



 Score = 33.5 bits (73), Expect = 0.042
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +3

Query: 795 AHGGYSVFAGVXXRTXEG 848
           AHGGYSVF GV  RT EG
Sbjct: 223 AHGGYSVFTGVGERTREG 240


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +2

Query: 464 GTEGLVR-GQXVLDSGSPIRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPEF 640
           G + LVR G+ V  +   + +PVG   LGR++  +G PID +GPI T +   +  +AP  
Sbjct: 105 GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTERRRVQLKAPGI 164

Query: 641 VDXSVQXXXLVTGIKVVDLLAPYAK 715
           +  +     + TG+K +D + P  +
Sbjct: 165 LPRTSVCEPMQTGLKAIDSMVPIGR 189


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 407 VLEVAXHLGXXXVRTXAMDGTEGL-VRGQXVLDSGSPIRIPVGAETLGRIIXVIGEPIDE 583
           VLEVA H     V     +GT G+ VR   +  +G  +RIPV  + LGR+    G PID 
Sbjct: 63  VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPID- 117

Query: 584 RGP 592
           +GP
Sbjct: 118 KGP 120


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 591 GPRSSIGSPITXMMRPRVSA-PTGIRMGEPESSTXCPRTKPSVPSM 457
           G R++ G+P       R+++ PT I    PES       K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,367
Number of Sequences: 5004
Number of extensions: 37911
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)