Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B21
         (908 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162...    35   0.078
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315...    31   1.7  
02_05_1214 + 34976814-34979813                                         30   2.2  
03_02_0325 - 7467862-7468054,7468668-7468752,7469124-7469290,747...    29   3.9  
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808...    29   5.1  
11_06_0693 - 26334574-26336121                                         28   8.9  
06_03_0465 + 21049412-21049878,21049947-21050790,21050994-210511...    28   8.9  
01_05_0513 - 22864657-22867899                                         28   8.9  

>06_03_0510 -
           21615724-21615909,21615992-21616075,21616164-21616217,
           21616324-21616371,21616529-21616611,21616963-21617113,
           21617648-21617785,21617966-21618094,21618391-21618596,
           21618734-21618845,21619145-21619204,21619331-21619429,
           21619520-21619575,21620230-21620313,21621407-21621500
          Length = 527

 Score = 35.1 bits (77), Expect = 0.078
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = +2

Query: 461 DGTEGLVRGQXVLD-SGSPIRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPE 637
           +GT G+      +  +G  ++ PV  + LGRI    G+PID   PI       I   +  
Sbjct: 114 EGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSIN 173

Query: 638 FVDXSVQXXXLVTGIKVVDLLAPYAK 715
             + +     + TGI  +D++   A+
Sbjct: 174 PSERTYPEEMIQTGISTIDVMNSIAR 199


>01_06_0458 +
           29531069-29531126,29531247-29531302,29531407-29531505,
           29531989-29532048,29532285-29532396,29532459-29532694,
           29533092-29533220,29533325-29533462,29534043-29534193,
           29534394-29534476,29534658-29534705,29534828-29534881,
           29534971-29535054,29535152-29535337
          Length = 497

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 461 DGTEGLVRGQXVLD-SGSPIRIPVGAETLGRIIXVIGEPIDERGPI 595
           +GT G+      +  +G  ++ PV  + LGR+    G+PID   PI
Sbjct: 74  EGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPI 119


>02_05_1214 + 34976814-34979813
          Length = 999

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 652 CAAGXSRNWYKSRRSARSLCQRWXDWVVWXSWCGXTVL 765
           C A   + W ++R    S+C RW +   W  +   TV+
Sbjct: 614 CVAKYGQKWIRTRTVVDSVCPRWNEQYTWEVFDPCTVI 651


>03_02_0325 -
           7467862-7468054,7468668-7468752,7469124-7469290,
           7470130-7471133
          Length = 482

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -2

Query: 565 DYXDDASEGFSSHRDTNG*ARVEYGLPTD*AFSTVHGXGTYXVXSQVXRHLQDQAGRSIX 386
           D+ DD +EG  + +D +G A + YGL       TV   G   V +Q+ + L++    S+ 
Sbjct: 171 DHEDDDAEGAEAEKDADGEAALSYGL-------TVASKGQEAVLAQLDKVLEEYTTFSVK 223

Query: 385 HLK 377
            ++
Sbjct: 224 QVE 226


>12_02_0893 +
           24077634-24078379,24079347-24080412,24080741-24080866,
           24081278-24081384,24081720-24081744
          Length = 689

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 573 GSPITXMMRPRVSAPTGIRMGEPESSTXCPRTKPSVP 463
           GSP+    R  + AP G+  G+P++      ++PS+P
Sbjct: 452 GSPVYAQSRSPIRAPLGVSFGDPKAQ----NSRPSIP 484


>11_06_0693 - 26334574-26336121
          Length = 515

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 713 WHKERADRRLLYQLREXPAAQTXRQTLEL 627
           WH   A+RRLL+ L   P A+  R+ LEL
Sbjct: 20  WHPRTAERRLLHLLHHSPPAR--RRPLEL 46


>06_03_0465 +
           21049412-21049878,21049947-21050790,21050994-21051121,
           21051232-21051247
          Length = 484

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = +1

Query: 637 VCRXVCAA-GXSRNWYKSRRSARSLCQRWXDWVVWXSWCGXTVLIMXLITXVAXPM 801
           + R V AA G +  W      AR    R   W +W  WC   V +  +    A P+
Sbjct: 316 LARGVSAAVGIAATWVYPAAHARVSTLRAGLWSIWAQWCCLLVCVASVWAGGAAPL 371


>01_05_0513 - 22864657-22867899
          Length = 1080

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 652 CAAGXSRNWYKSRRSARSLCQRWXDWVVWXSWCGXTVL 765
           C A   + W ++R    SL  RW +   W  +   TVL
Sbjct: 697 CVAKYGKKWVRTRTVTDSLNPRWNEQYTWQVYDPCTVL 734


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,820,509
Number of Sequences: 37544
Number of extensions: 285866
Number of successful extensions: 629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)