Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B21
         (908 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               194   1e-49
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   1e-08
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 30   2.2  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  194 bits (472), Expect = 1e-49
 Identities = 93/125 (74%), Positives = 104/125 (83%)
 Frame = +2

Query: 341 QFEDNLPPILNALEVXNRSPRLVLEVAXHLGXXXVRTXAMDGTEGLVRGQXVLDSGSPIR 520
           QF+++LPPILNALEV NR+PRL+LEVA HLG   VRT AMDGTEGL+RGQ  +D+G PI 
Sbjct: 87  QFDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGPIT 146

Query: 521 IPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPEFVDXSVQXXXLVTGIKVVDLL 700
           IPVG ETLGRII VIGEPIDERGP+ T K AAIHAEAPEFV+ S +   L TGIKVVDLL
Sbjct: 147 IPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAEAPEFVEMSTEQEILETGIKVVDLL 206

Query: 701 APYAK 715
           APYAK
Sbjct: 207 APYAK 211


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
 Frame = +2

Query: 464 GTEGLVR-GQXVLDSGSPIRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPEF 640
           G + L++ G  V  +G+ + +PVG E LGR++  +G PID +GP    + A +  +AP  
Sbjct: 16  GNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVKAPGI 74

Query: 641 VDXSVQXXXLVTGIKVVDLLAPYAK 715
           +  +     ++TGIK VD L P  +
Sbjct: 75  IPRTSVKEPMLTGIKAVDSLVPIGR 99


>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 238

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = +3

Query: 798 HGGYSVFAGVXXRTXEG 848
           HGG SVFAGV  RT EG
Sbjct: 47  HGGLSVFAGVGERTREG 63



 Score = 29.9 bits (64), Expect = 3.0
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +2

Query: 668 LVTGIKVVDLLAPYAK 715
           L TGIKV+DL+ PYAK
Sbjct: 3   LFTGIKVIDLIEPYAK 18


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = -3

Query: 591 GPRSSIGSPITXMMRPRVSAPTGIRMGEPESSTXCPRTKPSVPSM 457
           GP SS+  P T    P    PTG+ M  P S    P   P  P M
Sbjct: 684 GPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGM 725


>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 506 GSPIRIPVGAETLGRIIXVIGEPIDERGPIPT 601
           G PI  P+G   +GR I  IG PI   GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,900,957
Number of Sequences: 59808
Number of extensions: 316625
Number of successful extensions: 597
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)