Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_B21
(908 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 192 4e-49
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 61 1e-09
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 61 1e-09
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 43 3e-04
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 36 0.040
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 33 0.37
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 29 3.5
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 3.5
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr... 28 8.0
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 192 bits (467), Expect = 4e-49
Identities = 107/189 (56%), Positives = 120/189 (63%), Gaps = 1/189 (0%)
Frame = +2
Query: 341 QFEDNLPPILNALEVXNRSPRLVLEVAXHLGXXXVRTXAMDGTEGLVRGQXVLDSGSPIR 520
QF++NLPPILN LEV RSPRL+LEV+ HLG VR AMDGTEGLVRGQ V D+G PI+
Sbjct: 83 QFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIK 142
Query: 521 IPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPEFVDXSVQXXXLVTGIKVVDLL 700
IPVG ETLGRI+ VIGEPIDERGPI + AAIHAEAPEFV+ SV+ LVTGIKVVDLL
Sbjct: 143 IPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLL 202
Query: 701 APYAKXXXXXXXXXXXVAXLY*LWX*SXMLPSPWWLLCVCWSXXPYS*R-XDLYXEMIES 877
APYAK V + + V + DLY EMIE
Sbjct: 203 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIEG 262
Query: 878 GVXSLKKXN 904
GV LK N
Sbjct: 263 GVIDLKGKN 271
Score = 35.1 bits (77), Expect = 0.070
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +3
Query: 795 AHGGYSVFAGVXXRTXEG 848
AHGGYSVFAGV RT EG
Sbjct: 235 AHGGYSVFAGVGERTREG 252
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 60.9 bits (141), Expect = 1e-09
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 464 GTEGLVR-GQXVLDSGSPIRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPEF 640
G + ++R G V +G+ + +PVG LGR++ +G PID +GPI + + + +AP
Sbjct: 78 GNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANARRSRVEVKAPGI 137
Query: 641 VDXSVQXXXLVTGIKVVDLLAPYAK 715
+ +VTG+K VD L P +
Sbjct: 138 IPRLSVREPMVTGVKAVDSLVPIGR 162
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 60.9 bits (141), Expect = 1e-09
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 464 GTEGLVR-GQXVLDSGSPIRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPEF 640
G + ++R G V +G+ + +PVG LGR++ +G PID +GPI + + + +AP
Sbjct: 105 GNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANARRSRVEVKAPGI 164
Query: 641 VDXSVQXXXLVTGIKVVDLLAPYAK 715
+ +VTG+K VD L P +
Sbjct: 165 IPRLSVREPMVTGVKAVDSLVPIGR 189
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 554 IXVIGEPIDERGPIPTXKTAAIHAEAPEFVDXSVQXXXLVTGIKVVDLLAPYAK 715
+ V+G PID +GPI + + + +AP + +VTG+K VD L P +
Sbjct: 101 VVVLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGR 154
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 35.9 bits (79), Expect = 0.040
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 461 DGTEGLVRGQXVLD-SGSPIRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPE 637
+GT G+ + + +G +R PV + LGRI G+PID+ P+ I+ +
Sbjct: 82 EGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDFLDINGQPIN 141
Query: 638 FVDXSVQXXXLVTGIKVVDLLAPYAK 715
+ TGI +D++ A+
Sbjct: 142 PWSRIYPEEMIQTGISAIDVMNSIAR 167
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 32.7 bits (71), Expect = 0.37
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +2
Query: 503 SGSPIRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPEFVDXSVQXXXLVTGI 682
+G R PV + LGRI G+PID+ P+ I+ + + + TGI
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGI 168
Query: 683 KVVDLLAPYAK 715
+D++ A+
Sbjct: 169 SAIDVMNSIAR 179
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/71 (26%), Positives = 26/71 (36%)
Frame = -3
Query: 642 TNSGASAWIAAVXSVGMGPRSSIGSPITXMMRPRVSAPTGIRMGEPESSTXCPRTKPSVP 463
T G +A +A M RS P+T M P + P S+ PR P
Sbjct: 11 TEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTP 70
Query: 462 SMAXVRTXXXP 430
+ A +T P
Sbjct: 71 TAAPPKTCAPP 81
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/71 (26%), Positives = 26/71 (36%)
Frame = -3
Query: 642 TNSGASAWIAAVXSVGMGPRSSIGSPITXMMRPRVSAPTGIRMGEPESSTXCPRTKPSVP 463
T G +A +A M RS P+T M P + P S+ PR P
Sbjct: 140 TEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTP 199
Query: 462 SMAXVRTXXXP 430
+ A +T P
Sbjct: 200 TAAPPKTCAPP 210
>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
T08G11.1b protein.
Length = 3185
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/78 (23%), Positives = 28/78 (35%)
Frame = +2
Query: 350 DNLPPILNALEVXNRSPRLVLEVAXHLGXXXVRTXAMDGTEGLVRGQXVLDSGSPIRIPV 529
DN P L + R P G ++ ++ +GL+ +L SG R P
Sbjct: 2688 DNTPKPFIELSLLQRQPEFSSIAEIEYGHVLIQEFSVQVDQGLINALLLLISGEVTRKPY 2747
Query: 530 GAETLGRIIXVIGEPIDE 583
G E I + + E
Sbjct: 2748 GKEMFDEDIKICHVTLSE 2765
>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
T08G11.1a protein.
Length = 3212
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/78 (23%), Positives = 28/78 (35%)
Frame = +2
Query: 350 DNLPPILNALEVXNRSPRLVLEVAXHLGXXXVRTXAMDGTEGLVRGQXVLDSGSPIRIPV 529
DN P L + R P G ++ ++ +GL+ +L SG R P
Sbjct: 2715 DNTPKPFIELSLLQRQPEFSSIAEIEYGHVLIQEFSVQVDQGLINALLLLISGEVTRKPY 2774
Query: 530 GAETLGRIIXVIGEPIDE 583
G E I + + E
Sbjct: 2775 GKEMFDEDIKICHVTLSE 2792
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,280,248
Number of Sequences: 27780
Number of extensions: 224332
Number of successful extensions: 416
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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