Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_B21
(908 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 150 1e-36
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 150 1e-36
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 150 1e-36
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 54 1e-07
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 35 0.065
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 35 0.065
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 35 0.086
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 35 0.086
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 35 0.086
At3g62640.1 68416.m07036 expressed protein 31 1.4
At1g04150.1 68414.m00405 C2 domain-containing protein contains I... 29 4.3
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 150 bits (364), Expect = 1e-36
Identities = 76/127 (59%), Positives = 91/127 (71%), Gaps = 2/127 (1%)
Frame = +2
Query: 341 QFEDN--LPPILNALEVXNRSPRLVLEVAXHLGXXXVRTXAMDGTEGLVRGQXVLDSGSP 514
+FED LPPI+ +LEV + RLVLEV+ HLG VRT AMDGTEGLVRG+ VL++G+P
Sbjct: 97 RFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAP 156
Query: 515 IRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPEFVDXSVQXXXLVTGIKVVD 694
I +PVG TLGRI+ V+GEPIDERG I T IH +AP VD + L TGIKVVD
Sbjct: 157 ITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVD 216
Query: 695 LLAPYAK 715
LLAPY +
Sbjct: 217 LLAPYQR 223
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +3
Query: 795 AHGGYSVFAGVXXRTXEG 848
AHGG+SVFAGV RT EG
Sbjct: 251 AHGGFSVFAGVGERTREG 268
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 150 bits (364), Expect = 1e-36
Identities = 76/127 (59%), Positives = 91/127 (71%), Gaps = 2/127 (1%)
Frame = +2
Query: 341 QFEDN--LPPILNALEVXNRSPRLVLEVAXHLGXXXVRTXAMDGTEGLVRGQXVLDSGSP 514
+FED LPPI+ +LEV + RLVLEV+ HLG VRT AMDGTEGLVRG+ VL++G+P
Sbjct: 100 RFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAP 159
Query: 515 IRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPEFVDXSVQXXXLVTGIKVVD 694
I +PVG TLGRI+ V+GEPIDERG I T IH +AP VD + L TGIKVVD
Sbjct: 160 ITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVD 219
Query: 695 LLAPYAK 715
LLAPY +
Sbjct: 220 LLAPYQR 226
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +3
Query: 795 AHGGYSVFAGVXXRTXEG 848
AHGG+SVFAGV RT EG
Sbjct: 254 AHGGFSVFAGVGERTREG 271
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 150 bits (364), Expect = 1e-36
Identities = 76/127 (59%), Positives = 91/127 (71%), Gaps = 2/127 (1%)
Frame = +2
Query: 341 QFEDN--LPPILNALEVXNRSPRLVLEVAXHLGXXXVRTXAMDGTEGLVRGQXVLDSGSP 514
+FED LPPI+ +LEV + RLVLEV+ HLG VRT AMDGTEGLVRG+ VL++G+P
Sbjct: 97 RFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAP 156
Query: 515 IRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPEFVDXSVQXXXLVTGIKVVD 694
I +PVG TLGRI+ V+GEPIDERG I T IH +AP VD + L TGIKVVD
Sbjct: 157 ITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVD 216
Query: 695 LLAPYAK 715
LLAPY +
Sbjct: 217 LLAPYQR 223
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +3
Query: 795 AHGGYSVFAGVXXRTXEG 848
AHGG+SVFAGV RT EG
Sbjct: 251 AHGGFSVFAGVGERTREG 268
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/100 (27%), Positives = 46/100 (46%)
Frame = +2
Query: 416 VAXHLGXXXVRTXAMDGTEGLVRGQXVLDSGSPIRIPVGAETLGRIIXVIGEPIDERGPI 595
+A +L V G + G V +GS + +P G LGR++ +G PID +G +
Sbjct: 334 MALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGAL 393
Query: 596 PTXKTAAIHAEAPEFVDXSVQXXXLVTGIKVVDLLAPYAK 715
+ + +AP ++ + TG+K VD L P +
Sbjct: 394 SDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGR 433
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 35.1 bits (77), Expect = 0.065
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +2
Query: 461 DGTEGLVRGQXVLD-SGSPIRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPE 637
+GT G+ + +G ++ PV + LGRI G+PID PI I +
Sbjct: 73 EGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSIN 132
Query: 638 FVDXSVQXXXLVTGIKVVDLLAPYAK 715
+ + + TGI +D++ A+
Sbjct: 133 PSERTYPEEMIQTGISTIDVMNSIAR 158
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 35.1 bits (77), Expect = 0.065
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +2
Query: 461 DGTEGLVRGQXVLD-SGSPIRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPE 637
+GT G+ + +G ++ PV + LGRI G+PID PI I +
Sbjct: 73 EGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSIN 132
Query: 638 FVDXSVQXXXLVTGIKVVDLLAPYAK 715
+ + + TGI +D++ A+
Sbjct: 133 PSERTYPEEMIQTGISTIDVMNSIAR 158
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 34.7 bits (76), Expect = 0.086
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 461 DGTEGLV-RGQXVLDSGSPIRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPE 637
+GT G+ + V +G ++ PV + LGRI G+PID PI I +
Sbjct: 72 EGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSIN 131
Query: 638 FVDXSVQXXXLVTGIKVVDLLAPYAK 715
+ + + TGI +D++ A+
Sbjct: 132 PSERTYPEEMIQTGISTIDVMNSIAR 157
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 34.7 bits (76), Expect = 0.086
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 461 DGTEGLV-RGQXVLDSGSPIRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPE 637
+GT G+ + V +G ++ PV + LGRI G+PID PI I +
Sbjct: 72 EGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSIN 131
Query: 638 FVDXSVQXXXLVTGIKVVDLLAPYAK 715
+ + + TGI +D++ A+
Sbjct: 132 PSERTYPEEMIQTGISTIDVMNSIAR 157
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 34.7 bits (76), Expect = 0.086
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +2
Query: 461 DGTEGLV-RGQXVLDSGSPIRIPVGAETLGRIIXVIGEPIDERGPIPTXKTAAIHAEAPE 637
+GT G+ + V +G ++ PV + LGRI G+PID PI I +
Sbjct: 72 EGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSIN 131
Query: 638 FVDXSVQXXXLVTGIKVVDLLAPYAK 715
+ + + TGI +D++ A+
Sbjct: 132 PSERTYPEEMIQTGISTIDVMNSIAR 157
>At3g62640.1 68416.m07036 expressed protein
Length = 110
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = -3
Query: 540 VSAPTGIRMGEPESSTXCPRTKPSVPSMAXVRTXXXPKCXATSKTKRGDRFXTSRAFRIG 361
V T + P+S P P S + RT P ++TKR R T + + +
Sbjct: 27 VGGTTQVYSTRPDSPKFQPSIPPPPGSTSKTRTTATPWRLIDAETKRKKRIATYKTYALE 86
Query: 360 GKLSS 346
GK+ S
Sbjct: 87 GKVKS 91
>At1g04150.1 68414.m00405 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1012
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 652 CAAGXSRNWYKSRRSARSLCQRWXDWVVWXSWCGXTVL 765
C A W ++R SLC +W + W + TV+
Sbjct: 632 CVAKYGPKWVRTRTVVDSLCPKWNEQYTWEVYDPCTVV 669
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,798,581
Number of Sequences: 28952
Number of extensions: 213276
Number of successful extensions: 475
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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