Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B20
         (924 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   1.5  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   3.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.9  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 593 GQTVPESSITXKVLXMTVSSTGXXPADTFQPP 688
           GQ VPE S +      TVS+T   PA     P
Sbjct: 434 GQWVPEKSTSTTQRTTTVSTTEAPPAPAVSNP 465


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 542 KXPGDFXAGLVFGVTECNFXCGFVGRS 462
           K  GDF +G  + +  C+   GF  RS
Sbjct: 39  KVCGDFSSGKHYNIFACDGCAGFFKRS 65


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 542 KXPGDFXAGLVFGVTECNFXCGFVGRS 462
           K  GDF +G  + +  C+   GF  RS
Sbjct: 39  KVCGDFSSGKHYNIFACDGCAGFFKRS 65


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +2

Query: 323 TMDFAYQLWTKDG---KEIVKS--YFPIQFRVIFTEQT 421
           ++D+A + WTK G    +IV    +F   F + FT +T
Sbjct: 395 SVDYAVKFWTKKGFPKSKIVLGVPFFGRSFTLQFTNET 432


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,088
Number of Sequences: 336
Number of extensions: 2737
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25858250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)