Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B20
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    27   2.8  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.8  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    27   3.7  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   4.9  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    27   4.9  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   8.6  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   8.6  

>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -1

Query: 327 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAXSYSPMTTXIYSCSASTXSVLGASVAL 148
           M F    ++   T   + +PF   R+  HL      S +T+ +Y+ +  T     ++++ 
Sbjct: 1   MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57

Query: 147 EASAHTARTKA 115
             +A  A T A
Sbjct: 58  NGAAKEAATAA 68


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 469 PTKPQXKLHSVTPKTKPAXKSP 534
           PT  Q  L  +TP T PA K+P
Sbjct: 36  PTSKQAALSDITPDTPPAFKTP 57


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 257 KEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 367
           K +K  +   + +++++  K NT++ A Q W+K  KE
Sbjct: 139 KRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 191 QLYMXVVIGEY-EXAIAKCSEYLKEKKGEVIKEAVKRLIE 307
           Q+++ +V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 581 DLEVNSVVXQHGGKXPGDFXAGLVFGVTECNF 486
           DLE N +V Q+ G   G+F  G  FG  +  F
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTF 442


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 285 SLITSPFFSFRYSEHLAIAXSYSPMTTXIYSCSASTXSV 169
           SL+ S FFS  YSE   +   +  +   IYS S S  S+
Sbjct: 6   SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGSL 44


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 496  NAIXXVVLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 362
            N     V+L+  + G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1278 NTFNAHVVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,460
Number of Sequences: 5004
Number of extensions: 44187
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)