Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B20
         (924 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1159 - 24427896-24428288                                         30   2.3  
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211...    30   3.0  
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649     29   3.9  
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645     29   6.9  
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830...    29   6.9  

>07_03_1159 - 24427896-24428288
          Length = 130

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = +1

Query: 382 LPHPV*SDLHRADCXAH-------KQKGPSRPQVDRPTKPQXKLHSVTPKTKP 519
           LPHP   +L + +   H       K + PS P+V+ P  P+ + H   P+ KP
Sbjct: 78  LPHPEVPELPKPELPEHPAVPELPKPELPSLPKVELPPLPKPEFHFPEPEAKP 130


>03_01_0273 -
           2107778-2108772,2108857-2109043,2109121-2110575,
           2110670-2111251
          Length = 1072

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
 Frame = -3

Query: 340 VGEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSG-----------LVFTNDDTHIQ 194
           V E  G+P+AV D  +    D +  +FL+        G           L   N D+ I 
Sbjct: 705 VDEFFGIPVAVRDDLVQDLADGMEAIFLEYISFLTSCGSKQSYLPSLPPLTRCNQDSKII 764

Query: 193 LLRQYXISXWCKCGVRSQRTHGEDEGKQXQAQLG 92
            L +   +  C+  V S R HG  +G+   A  G
Sbjct: 765 RLWKKAATP-CRAPVSSPRAHGHHQGQGGMASGG 797


>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
          Length = 461

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 472 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 386
           +V    GVM P + +L  LLGE+++KL G
Sbjct: 7   IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35


>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
          Length = 375

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 409 HRADCXAHKQKGPSRPQVDRPTKPQXKLHSVTPKTKPAXKSPGXLP 546
           H+A C  H QK P + ++  P   Q  L  + P + P  K    LP
Sbjct: 121 HQAKCSPHPQKRPMQQKLPFPPSSQKSL--MEPSSDPTQKKLPFLP 164


>04_03_0694 +
           18781776-18781994,18782475-18782648,18782743-18783057,
           18783791-18785569,18786334-18786651,18787052-18787105
          Length = 952

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +2

Query: 191 QLYMXVVI---GEYEXAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG 361
           +LY+ +++   G Y+ A+   S     + G  +KE  K L+E+    T++   +L T  G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGG 550

Query: 362 KEIVK 376
             + +
Sbjct: 551 DPMTR 555


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,867,236
Number of Sequences: 37544
Number of extensions: 320346
Number of successful extensions: 892
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)