Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B20
         (924 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF333072-2|AAL60056.1|  702|Homo sapiens pol protein protein.          31   4.5  

>AF333072-2|AAL60056.1|  702|Homo sapiens pol protein protein.
          Length = 702

 Score = 31.5 bits (68), Expect = 4.5
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -3

Query: 550 TGVXFQETXLLVWSLESPNAIXXVVLLVDQLEGVMVPFVYELDSLLGEDHSKL 392
           TG+  Q T L+ WS    + +    L +DQ+  ++ P    +  L G D  K+
Sbjct: 239 TGIIIQNTDLVEWSFLPHSTVKTFTLYLDQIATLIGPTRLRIIKLCGNDPDKI 291


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,145,714
Number of Sequences: 237096
Number of extensions: 1727886
Number of successful extensions: 4098
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4097
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12047931574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)