Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B20
         (924 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    32   0.67 
Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fb...    29   6.2  
Z22180-4|CAA80178.1|  312|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       28   8.2  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    28   8.2  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    28   8.2  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    28   8.2  

>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 194 LYMXVVIGEYEXAIA-KCSEYLKEKKGEVIKEAVKRLIE 307
           LYM   +G+Y+   A KC +Y K+  G+   EA++  I+
Sbjct: 87  LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125


>Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical
           protein C08H9.11 protein.
          Length = 459

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +2

Query: 248 EYLKEKKGEVIKEA-VKRLIENGKRNTMDFAYQLWTKDGKEIVKSY--FPIQFRVIFTEQ 418
           EY +    E  +   VK ++   K+N +D     WT+   E +KSY  F  + R  FTE 
Sbjct: 187 EYSRLVSNETSRNVFVKSIVSFFKKNDIDGIEIFWTRPKYEDIKSYSSFIQELRSAFTEL 246

Query: 419 TVXLINKRDHHALKLIDQQNH 481
                 K ++    ++ ++ H
Sbjct: 247 QKRWNRKNEYIISLIVPKEKH 267


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
 Frame = +1

Query: 448 SRPQVDRPTKPQXKLHSVTPKTKPAXKSPGXLPPCWXTTE--FTSRSCXPRTNST*KLXN 621
           + P    P K +    +  PKT+P    P  +P CW      F      PR N+T  L  
Sbjct: 400 TEPPPTEPPKTEPP-KTTPPKTEPPTTEPPNIPYCWQQQSRLFAPSPPPPRVNNTMPLIE 458

Query: 622 TK 627
            K
Sbjct: 459 DK 460


>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 155 TLAPXTDXVLAEQL-YMXVVIGEYEXAIAKCSEYLKEKKGEVIK 283
           TL+     +  E++ Y+ ++   +E  + KC+ Y  EK GEV+K
Sbjct: 255 TLSDFWHMIYQEKIAYVLMLCTLFEGGVEKCALYYPEKLGEVVK 298


>U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical
           protein F55F8.7 protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 155 TLAPXTDXVLAEQL-YMXVVIGEYEXAIAKCSEYLKEKKGEVIK 283
           TL+     +  E++ Y+ ++   +E  + KC+ Y  EK GEV+K
Sbjct: 256 TLSDFWHMIYQEKIAYVLMLCTLFEGGVEKCALYYPEKLGEVVK 299


>U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 9 protein.
          Length = 703

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +2

Query: 188 EQLYMXVVIGEYEXAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 367
           E+ Y   ++GE E  + KC   +K++ G      ++++IE  +   + F    +TK+  +
Sbjct: 440 EEKYQHEILGEMEGQVLKC---VKDQNG---NHVIQKVIERVEPERLQFIIDAFTKNNSD 493

Query: 368 IV--KSYFPIQFRVI 406
            V   S  P   RVI
Sbjct: 494 NVYTLSVHPYGCRVI 508


>Z22180-4|CAA80178.1|  312|Caenorhabditis elegans Hypothetical
           protein K11H3.3 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 272 EVIKEAVKRLIENGKRNTMDFAYQLWTKDG 361
           +V+K  ++ L     +NT+D A Q+W K+G
Sbjct: 242 DVVKTRMQGLEAKKYKNTLDCAMQIWKKEG 271


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 433  KQKGPSRPQVDRPTKPQXKLHSVTPKTKPAXKSP 534
            K+K P + + ++PT P  K  S T KT    KSP
Sbjct: 1655 KEKSPEKVE-EKPTSPTKKESSPTKKTDDEVKSP 1687


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 433  KQKGPSRPQVDRPTKPQXKLHSVTPKTKPAXKSP 534
            K+K P + + ++PT P  K  S T KT    KSP
Sbjct: 1655 KEKSPEKVE-EKPTSPTKKESSPTKKTDDEVKSP 1687


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 433  KQKGPSRPQVDRPTKPQXKLHSVTPKTKPAXKSP 534
            K+K P + + ++PT P  K  S T KT    KSP
Sbjct: 1655 KEKSPEKVE-EKPTSPTKKESSPTKKTDDEVKSP 1687


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 433  KQKGPSRPQVDRPTKPQXKLHSVTPKTKPAXKSP 534
            K+K P + + ++PT P  K  S T KT    KSP
Sbjct: 1655 KEKSPEKVE-EKPTSPTKKESSPTKKTDDEVKSP 1687


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,330,573
Number of Sequences: 27780
Number of extensions: 256958
Number of successful extensions: 907
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)