Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B19
         (1246 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               31   2.5  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  30   3.3  

>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 1144 ISPPXTXPPXKRXPPPXXPPP 1206
            I PP + PP    PPP  PPP
Sbjct: 1305 IQPPESPPPPPPPPPPPPPPP 1325


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 1150 PPXTXPPXKRXPPPXXPPP 1206
            PP + PP  + PPP  PPP
Sbjct: 385  PPPSPPPPPQPPPPPPPPP 403



 Score = 29.1 bits (62), Expect = 7.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 1150 PPXTXPPXKRXPPPXXPPP 1206
            PP + PP    PPP  PPP
Sbjct: 374  PPPSPPPPPPPPPPSPPPP 392



 Score = 29.1 bits (62), Expect = 7.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 1150 PPXTXPPXKRXPPPXXPPP 1206
            PP   PP +  PPP  PPP
Sbjct: 386  PPSPPPPPQPPPPPPPPPP 404


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,951,167
Number of Sequences: 59808
Number of extensions: 99244
Number of successful extensions: 1235
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3893203050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)