Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B19
         (1246 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body prot...    29   5.2  
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot...    29   5.2  
U40802-1|AAM81106.1|  999|Caenorhabditis elegans Dense body prot...    29   5.2  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   5.2  
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele...    29   5.2  

>U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body protein
            1, isoform b protein.
          Length = 369

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 1147 SPPXTXPPXKRXPPPXXPPP 1206
            +PP   PP +  PPP  PPP
Sbjct: 146  APPRPPPPVELSPPPRPPPP 165


>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
            1, isoform a protein.
          Length = 1010

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 1147 SPPXTXPPXKRXPPPXXPPP 1206
            +PP   PP +  PPP  PPP
Sbjct: 787  APPRPPPPVELSPPPRPPPP 806


>U40802-1|AAM81106.1|  999|Caenorhabditis elegans Dense body protein
            1, isoform c protein.
          Length = 999

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 1147 SPPXTXPPXKRXPPPXXPPP 1206
            +PP   PP +  PPP  PPP
Sbjct: 787  APPRPPPPVELSPPPRPPPP 806


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
            related) protein 4 protein.
          Length = 210

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 1144 ISPPXTXPPXKRXPPPXXPPP 1206
            I PP   PP    PPP  PPP
Sbjct: 50   ICPPQFCPPPPMCPPPPPPPP 70


>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.elegans
            vinculin (deb-1) gene, complete cds. ).
          Length = 1010

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 1147 SPPXTXPPXKRXPPPXXPPP 1206
            +PP   PP +  PPP  PPP
Sbjct: 787  APPRPPPPVELSPPPRPPPP 806


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,551,485
Number of Sequences: 27780
Number of extensions: 87117
Number of successful extensions: 871
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3453805598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)