Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B18
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   28   7.7  

>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 662 PPPKXXKKKKXXXXXXXXXXPPXXXXXPPPPPP 760
           PPP   K             PP     PPPPPP
Sbjct: 779 PPPPPTKPATPRVPPNIPSRPPGARPTPPPPPP 811


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 662 PPPKXXKKKKXXXXXXXXXXPPXXXXXPPPPPP 760
           PPP   K             PP     PPPPPP
Sbjct: 367 PPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPP 399


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +1

Query: 652 GGXPPPKXXKKKKXXXXXXXXXPPPXXKXXPXPPPP 759
           G  PPP                PPP     P PPPP
Sbjct: 344 GAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPPP 379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.140    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,578,613
Number of Sequences: 59808
Number of extensions: 114292
Number of successful extensions: 1474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)