Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B18
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   2.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   2.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   2.9  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   5.1  
U50310-5|AAA92541.1|  318|Caenorhabditis elegans Ground-like (gr...    28   8.9  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 653 GGXPPPKXXKKKKXXXXXXXXXXPPXXXXXPPPPPP 760
           GG PPP                 PP     PPPPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 653 GGXPPPKXXKKKKXXXXXXXXXXPPXXXXXPPPPPP 760
           GG PPP                 PP     PPPPPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 653 GGXPPPKXXKKKKXXXXXXXXXXPPXXXXXPPPPPP 760
           GG PPP                 PP     PPPPPP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 358


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +1

Query: 652  GGXPPPKXXKKKKXXXXXXXXXPPPXXKXXPXPPPP 759
            GG PPP+     +         PP      P PPPP
Sbjct: 1571 GGPPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPP 1606


>U50310-5|AAA92541.1|  318|Caenorhabditis elegans Ground-like (grd
           related) protein 9 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +1

Query: 661 PPPKXXKKKKXXXXXXXXXPPPXXKXXPXPPPP 759
           PPP    + +         PPP     P PPPP
Sbjct: 117 PPPPVQYQNQGPQYIEAPPPPPSPPPPPPPPPP 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.140    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,465,168
Number of Sequences: 27780
Number of extensions: 119822
Number of successful extensions: 1435
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)