Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B18
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07760.1 68418.m00888 formin homology 2 domain-containing pro...    29   4.7  
At3g50180.1 68416.m05486 hypothetical protein                          28   8.3  

>At5g07760.1 68418.m00888 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 853

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +1

Query: 661 PPPKXXKKKKXXXXXXXXXPPPXXKXXPXPPPP 759
           PPP      +         PPP  +  P PPPP
Sbjct: 26  PPPPPPPPMRRRAPLPPPPPPPMRRRAPLPPPP 58


>At3g50180.1 68416.m05486 hypothetical protein
          Length = 588

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +2

Query: 662 PPPKXXKKKKXXXXXXXXXXPPXXXXXPPPPPP 760
           PPP    + +          PP     PPPPPP
Sbjct: 9   PPPPLPPRLELRRQRAPPPQPPPPPPPPPPPPP 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.140    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,089,852
Number of Sequences: 28952
Number of extensions: 123075
Number of successful extensions: 2486
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)