Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B14
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    39   8e-04
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   0.68 
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   8.4  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = +1

Query: 367 FGSLIIGYARNPSLKQQLFSYAILGFAL 450
           F +LI G +RNPS++  LFS AILGFAL
Sbjct: 28  FSNLISGTSRNPSVRPHLFSMAILGFAL 55


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 661 AHCRCNTHQSLHXYEGEVSKHSIPWLSTP 575
           A  R NT Q    Y G    HS PW S+P
Sbjct: 146 AAVRKNTEQEKMGYRGGYQMHSTPWASSP 174


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 114 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 227
           + VC    R C ++ +   L   + +C  +    DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,924
Number of Sequences: 5004
Number of extensions: 55924
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)