Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B14
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678...    32   0.71 
01_05_0490 + 22672241-22674679                                         31   0.94 
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462     30   2.2  
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188...    29   5.0  
07_03_1191 + 24690936-24691029,24691184-24691377                       29   5.0  
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643...    29   5.0  
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505     28   8.8  

>03_02_0994 -
           13067254-13067379,13067483-13067521,13067824-13067893,
           13068025-13068116,13068237-13068319,13068590-13068633,
           13068682-13068800,13068883-13068915,13069152-13069239,
           13069364-13069413
          Length = 247

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 120 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 248
           VC  T++P +QVC+   +C G   CS+   + D   C    LC
Sbjct: 51  VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 263 RPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPP 406
           +P + + T+T  P  L    R+W   + E+VLEQ S    + MP  PP
Sbjct: 296 QPQQPVETVTPTPPPLAR-SRRWNPEMLEVVLEQESRVEETTMPPPPP 342


>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
          Length = 106

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 120 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 221
           +CRQ +  C   CH++ LC G  + S   P T G
Sbjct: 38  ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70


>12_02_1152 +
           26515422-26515460,26516317-26516454,26518647-26518809,
           26519165-26519213,26519315-26519390,26520348-26520473
          Length = 196

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -3

Query: 297 SRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 127
           S +N+++ RCG    HC  L   +   L       +  H   + E G  GC  DQSG
Sbjct: 20  SMLNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72


>07_03_1191 + 24690936-24691029,24691184-24691377
          Length = 95

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 120 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 230
           VC++T+  C+Q  CH + L  G T  S    + D  CC
Sbjct: 38  VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75


>02_02_0059 -
           6432945-6433115,6433975-6434061,6434585-6434787,
           6435281-6435392,6435473-6435517,6435622-6435726,
           6435946-6435996,6436026-6436103,6437258-6437313,
           6437784-6437853,6438288-6438392,6438525-6438637,
           6439354-6439534,6439635-6440390
          Length = 710

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 122 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHRS--LRTLTL 295
           +PP   PL+P +PSS+  H    LQ      +  L  +HS      +RP  S  L    L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238

Query: 296 LPNS 307
           +PN+
Sbjct: 239 MPNA 242


>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
          Length = 213

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 274 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 128
           P+W G   ++ AV G + P+ +G+   ++  P Q+    + W+    VW
Sbjct: 8   PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,591,155
Number of Sequences: 37544
Number of extensions: 425825
Number of successful extensions: 1401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)