Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_B14
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.71 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   5.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 130 WRQTAFCFYKVRRATTKNTEKEETGL 53
           W Q  FC+++   AT KN  +    L
Sbjct: 533 WFQNTFCYFRRNAATWKNAVRHNLSL 558



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -2

Query: 529 FLKVNSLESEEQQERHHK 476
           F++ +SL  ++QQ++HH+
Sbjct: 91  FMQQHSLYLQQQQQQHHQ 108


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 493 QERHHKTEQTHSLRPRRNPEWRMRTT 416
           ++R H++  T  +  +  P+W  R+T
Sbjct: 596 EKREHRSSSTKGITIQEPPQWHTRST 621


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/37 (18%), Positives = 19/37 (51%)
 Frame = -2

Query: 520 VNSLESEEQQERHHKTEQTHSLRPRRNPEWRMRTTAA 410
           +N+ + ++QQ++  + +Q    + ++   W M    A
Sbjct: 435 INAQQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEEPA 471


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,547
Number of Sequences: 438
Number of extensions: 4172
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)